STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLF13087.1Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)    
Predicted Functional Partners:
OLF10970.1
50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.947
OLF10986.1
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.943
OLF10979.1
50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.942
BLA60_13375
Serine protease; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.942
rpsN
30S ribosomal protein S14; Located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.899
OLF10566.1
30S ribosomal protein S14; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.899
OLF10974.1
50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.876
OLF10023.1
50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.854
OLF10956.1
30S ribosomal protein S11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.853
OLF10985.1
30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.847
Your Current Organism:
Actinophytocola xinjiangensis
NCBI taxonomy Id: 485602
Other names: A. xinjiangensis, Actinophytocola sp. QAIII60, Actinophytocola xinjiangensis Guo et al. 2011, Amycolatopsis sp. QAIII60, CGMCC 4.4663, DSM 45854, NBRC 106673, strain QAIII60
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