STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLF11086.1DNAase; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)    
Predicted Functional Partners:
OLF11238.1
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.929
OLF11239.1
Resuscitation-promoting factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.783
OLF11087.1
methionine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.736
OLF11084.1
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.714
OLF08439.1
Signal recognition particle protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.601
OLF11726.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.542
OLF04308.1
Single-stranded DNA-binding protein; Binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.542
OLF13047.1
Protein translocase subunit SecDF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.533
obgE
ObgE; essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.529
OLF04954.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.523
Your Current Organism:
Actinophytocola xinjiangensis
NCBI taxonomy Id: 485602
Other names: A. xinjiangensis, Actinophytocola sp. QAIII60, Actinophytocola xinjiangensis Guo et al. 2011, Amycolatopsis sp. QAIII60, CGMCC 4.4663, DSM 45854, NBRC 106673, strain QAIII60
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