OLF10551.1 protein (Actinophytocola xinjiangensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OLF10551.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (488 aa)

Predicted Functional Partners:

OLF10559.1

0.978

OLF10558.1

0.967

OLF07820.1

0.926

OLF10550.1

0.901

OLF07819.1

0.877

OLF10556.1

0.774

OLF11061.1

0.750

OLF07188.1

0.750

OLF10590.1

0.717

OLF13973.1

0.711

Your Current Organism:

Actinophytocola xinjiangensis

NCBI taxonomy Id: 485602
Other names: A. xinjiangensis, Actinophytocola sp. QAIII60, Actinophytocola xinjiangensis Guo et al. 2011, Amycolatopsis sp. QAIII60, CGMCC 4.4663, DSM 45854, NBRC 106673, strain QAIII60

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OLF07188.1	OLF07819.1	BLA60_28700	BLA60_26235	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
OLF07188.1	OLF07820.1	BLA60_28700	BLA60_26240	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
OLF07188.1	OLF10551.1	BLA60_28700	BLA60_15325	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
OLF07188.1	OLF10556.1	BLA60_28700	BLA60_15355	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anchored repeat ABC transporter, substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
OLF07188.1	OLF10558.1	BLA60_28700	BLA60_15365	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anchored repeat-type ABC transporter ATP-binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
OLF07188.1	OLF10559.1	BLA60_28700	BLA60_15370	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anchored repeat-type ABC transporter permease subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
OLF07188.1	OLF10590.1	BLA60_28700	BLA60_15560	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
OLF07188.1	OLF13973.1	BLA60_28700	BLA60_01995	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
OLF07819.1	OLF07188.1	BLA60_26235	BLA60_28700	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
OLF07819.1	OLF07820.1	BLA60_26235	BLA60_26240	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OLF07819.1	OLF10551.1	BLA60_26235	BLA60_15325	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
OLF07819.1	OLF10556.1	BLA60_26235	BLA60_15355	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anchored repeat ABC transporter, substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
OLF07819.1	OLF10558.1	BLA60_26235	BLA60_15365	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anchored repeat-type ABC transporter ATP-binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
OLF07819.1	OLF10559.1	BLA60_26235	BLA60_15370	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anchored repeat-type ABC transporter permease subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
OLF07819.1	OLF10590.1	BLA60_26235	BLA60_15560	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
OLF07819.1	OLF11061.1	BLA60_26235	BLA60_13730	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
OLF07819.1	OLF13973.1	BLA60_26235	BLA60_01995	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
OLF07820.1	OLF07188.1	BLA60_26240	BLA60_28700	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
OLF07820.1	OLF07819.1	BLA60_26240	BLA60_26235	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OLF07820.1	OLF10551.1	BLA60_26240	BLA60_15325	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926

page 1 of 5

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About