OLF09493.1 protein (Actinophytocola xinjiangensis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

OLF09493.1

Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)

Predicted Functional Partners:

OLF05114.1

0.629

OLF06982.1

0.561

OLF08367.1

0.499

OLF09568.1

0.497

OLF09810.1

0.459

OLF05737.1

0.434

OLF12638.1

0.410

Your Current Organism:

Actinophytocola xinjiangensis

NCBI taxonomy Id: 485602
Other names: A. xinjiangensis, Actinophytocola sp. QAIII60, Actinophytocola xinjiangensis Guo et al. 2011, Amycolatopsis sp. QAIII60, CGMCC 4.4663, DSM 45854, NBRC 106673, strain QAIII60

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OLF05114.1	OLF09493.1	BLA60_37685	BLA60_20275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
OLF05737.1	OLF06982.1	BLA60_35080	BLA60_29440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.756
OLF05737.1	OLF09493.1	BLA60_35080	BLA60_20275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
OLF06982.1	OLF05737.1	BLA60_29440	BLA60_35080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
OLF06982.1	OLF09493.1	BLA60_29440	BLA60_20275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
OLF06982.1	OLF09810.1	BLA60_29440	BLA60_18750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
OLF08367.1	OLF09493.1	BLA60_23370	BLA60_20275	Muraminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
OLF09493.1	OLF05114.1	BLA60_20275	BLA60_37685	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
OLF09493.1	OLF05737.1	BLA60_20275	BLA60_35080	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
OLF09493.1	OLF06982.1	BLA60_20275	BLA60_29440	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.561
OLF09493.1	OLF08367.1	BLA60_20275	BLA60_23370	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Muraminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
OLF09493.1	OLF09568.1	BLA60_20275	BLA60_20270	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
OLF09493.1	OLF09810.1	BLA60_20275	BLA60_18750	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
OLF09493.1	OLF12638.1	BLA60_20275	BLA60_04895	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator NrdR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
OLF09568.1	OLF09493.1	BLA60_20270	BLA60_20275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
OLF09810.1	OLF06982.1	BLA60_18750	BLA60_29440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.756
OLF09810.1	OLF09493.1	BLA60_18750	BLA60_20275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
OLF12638.1	OLF09493.1	BLA60_04895	BLA60_20275	Transcriptional regulator NrdR; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410

Network Stats

number of nodes:

2

number of edges:

1

average node degree:

1

avg. local clustering coefficient:

1

expected number of edges:

1

PPI enrichment p-value:

0.5

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006091

Generation of precursor metabolites and energy

5 of 92

1.14

0.69

0.0184

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0050136

NADH dehydrogenase (quinone) activity

3 of 15

1.71

0.85

0.0202

GO:0010181

FMN binding

3 of 15

1.71

0.85

0.0202

GO:0050661

NADP binding

2 of 9

1.75

0.71

0.0430

GO:0016491

Oxidoreductase activity

5 of 145

0.94

0.58

0.0202

GO:0036094

Small molecule binding

7 of 467

0.58

0.35

0.0430

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2973

Cyclase activity, and Nicotinate-nucleotide adenylyltransferase activity

3 of 5

2.18

1.47

0.0016

CL:3372

Mixed, incl. SLBB domain, and ACP-like superfamily

2 of 5

2.01

0.71

0.0467

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00010

Glycolysis / Gluconeogenesis

3 of 33

1.36

0.8

0.0154

map01200

Carbon metabolism

4 of 86

1.07

0.67

0.0154

map01110

Biosynthesis of secondary metabolites

6 of 328

0.67

0.43

0.0209

map01100

Metabolic pathways

11 of 891

0.5

0.42

0.00040

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00037

4Fe-4S binding domain

3 of 17

1.65

0.83

0.0212

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