STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLF08447.1Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)    
Predicted Functional Partners:
OLF08528.1
Ribonuclease HII; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.879
OLF08089.1
ATP F0F1 synthase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.841
OLF08779.1
Elongation factor 4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.753
OLF08324.1
aspartate--tRNA(Asn) ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.736
OLF06963.1
Asparagine ligase; AS-AR; AsnRS2; similar to asparaginyl-tRNA synthetase but lacking the N-terminal anticodon-binding site; the enzyme from Pyrococcus converts aspartic acid into asparagine; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.736
BLA60_05135
Ribonuclease BN; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.734
OLF09356.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.734
OLF06373.1
DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.679
ligC
ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.673
OLF10234.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.673
Your Current Organism:
Actinophytocola xinjiangensis
NCBI taxonomy Id: 485602
Other names: A. xinjiangensis, Actinophytocola sp. QAIII60, Actinophytocola xinjiangensis Guo et al. 2011, Amycolatopsis sp. QAIII60, CGMCC 4.4663, DSM 45854, NBRC 106673, strain QAIII60
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