STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_0239InterPro IPR016196:IPR011701; KEGG: stp:Strop_2289 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: A4X789 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily. (443 aa)    
Predicted Functional Partners:
Krac_0217
InterPro IPR016196:IPR011701; KEGG: ttr:Tter_0516 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: D1CET0 Major facilitator superfamily MFS_1; PFAM: Bacterial protein of unknown function (DUF894).
  
     0.775
Krac_4460
Major facilitator superfamily MFS_1; InterPro IPR016196:IPR011701; KEGG: tro:trd_A0314 permease of the major facilitator superfamily; PFAM: major facilitator superfamily MFS_1; SPTR: B9L3F1 Permease of the major facilitator superfamily; PFAM: Bacterial protein of unknown function (DUF894).
  
     0.775
Krac_7027
InterPro IPR016196:IPR011701; KEGG: ttr:Tter_0516 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: D1CET0 Major facilitator superfamily MFS_1; PFAM: Bacterial protein of unknown function (DUF894).
  
     0.775
Krac_5766
InterPro IPR016196:IPR011701; KEGG: sgr:SGR_1492 major facilitator superfamily permease; PFAM: major facilitator superfamily MFS_1; SPTR: B1VWJ5 Putative permease of the major facilitator superfamily; PFAM: Bacterial protein of unknown function (DUF894).
  
     0.774
Krac_3301
InterPro IPR016196:IPR011701; KEGG: ttr:Tter_0516 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: D1CET0 Major facilitator superfamily MFS_1; manually curated; PFAM: Bacterial protein of unknown function (DUF894); TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes).
  
     0.724
EFH88919.1
Amino acid adenylation domain protein; COGs: COG1020 Non-ribosomal peptide synthetase modules and related protein; InterProIPR010071:IPR006162:IPR020845:IPR001242:IPR 000873:IPR006163:IPR009081:IPR020459; KEGG: npu:Npun_F2181 amino acid adenylation domain-containing protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; SPTR: Q9RAH1 NosD; TIGRFAM: amino acid adenylation domain protein; PFAM: Phosphopantetheine attachment site; AMP-binding enzyme; Condensation domain; TIGRFAM: amino acid adenylation domain.
     
 0.543
EFH89634.1
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.464
Krac_0238
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013325:IPR013324:IPR014284:IPR007627:IPR 013249; KEGG: ttr:Tter_0477 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: D1CEP2 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
       0.432
Krac_6972
Amino acid adenylation domain protein; COGs: COG1020 Non-ribosomal peptide synthetase modules and related protein; InterProIPR010071:IPR009081:IPR006162:IPR020845:IPR 001242:IPR000873:IPR006163:IPR001031; KEGG: ava:Ava_1611 amino acid adenylation; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Thioesterase; SPTR: Q3MCQ2 Amino acid adenylation; TIGRFAM: amino acid adenylation domain protein; PFAM: Thioesterase domain; Phosphopantetheine attachment site; AMP-binding enzyme; Condensation domain; TIGRFAM: amino acid adenylation domain.
  
 
 0.412
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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