STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_0273Restriction endonuclease; InterPro IPR007560; KEGG: rru:Rru_A0200 restriction endonuclease; PFAM: restriction endonuclease; SPTR: C6I0A4 Restriction endonuclease; PFAM: Restriction endonuclease. (230 aa)    
Predicted Functional Partners:
Krac_4863
Sulfopyruvate decarboxylase; COGs: COG4032 thiamine-pyrophosphate-binding protein; KEGG: mtp:Mthe_1623 sulfopyruvate decarboxylase; PRIAM: Sulfopyruvate decarboxylase; SPTR: A0B9L6 Sulfopyruvate decarboxylase subunit alpha; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain.
   
    0.762
EFH89839.1
Transcriptional regulator, TrmB; COGs: COG1378 transcriptional regulator protein; InterPro IPR002831; KEGG: rca:Rcas_0136 transcriptional regulator, TrmB; PFAM: transcriptional regulator TrmB; SPTR: A7NFP5 Transcriptional regulator, TrmB; PFAM: Sugar-specific transcriptional regulator TrmB; Archaeal transcriptional regulator TrmB.
   
    0.700
Krac_9958
Transcriptional regulator, TrmB; COGs: COG1378 transcriptional regulator protein; InterPro IPR002831; KEGG: bbr:BB3556 putative transcriptional regulator; PFAM: transcriptional regulator TrmB; SPTR: Q7WGN3 Putative transcriptional regulator; PFAM: Sugar-specific transcriptional regulator TrmB; Archaeal transcriptional regulator TrmB.
   
    0.700
EFH89455.1
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterProIPR014603:IPR017900:IPR006655:IPR017896:IPR 001450; KEGG: tro:trd_1973 putative [Ni/Fe] hydrogenase, iron-sulfur cluster-binding subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: D1CAU4 4Fe-4S ferredoxin iron-sulfur binding domain protein; TIGRFAM: formate dehydrogenase, beta subunit, Fe-S containing.
   
    0.539
Krac_1239
Cyclic nucleotide-binding protein; COGs: COG1142 Fe-S-cluster-containing hydrogenase components 2; InterProIPR000595:IPR001450:IPR017900:IPR018488:IPR 014710:IPR018490:IPR017896; KEGG: mmb:Mmol_1047 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SMART: cyclic nucleotide-binding; SPTR: C5V5M5 Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain.
   
    0.539
Krac_7393
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017900:IPR014603:IPR001450:IPR017896; KEGG: ttr:Tter_0861 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: D1CFS2 4Fe-4S ferredoxin iron-sulfur binding domain protein; TIGRFAM: formate dehydrogenase, beta subunit, Fe-S containing.
   
    0.539
Krac_9171
Cyclic nucleotide-binding protein; COGs: COG1142 Fe-S-cluster-containing hydrogenase components 2; InterProIPR001450:IPR000595:IPR017896:IPR017900:IPR 018490:IPR014710; KEGG: mmb:Mmol_1047 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SMART: cyclic nucleotide-binding; SPTR: C6WVK7 Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain.
   
    0.539
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.