STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_0563Hypothetical protein. (87 aa)    
Predicted Functional Partners:
Krac_0562
ATP-dependent transcriptional regulator, MalT-like, LuxR family; COGs: COG2909 ATP-dependent transcriptional regulator protein; InterPro IPR000792:IPR011990:IPR011991:IPR016032; KEGG: rca:Rcas_4327 ATP-dependent transcription regulator LuxR; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: A7NS05 ATP-dependent transcriptional regulator, MalT-like, LuxR family; PFAM: Bacterial regulatory proteins, luxR family.
       0.613
Krac_0564
Extracellular solute-binding protein family 1; COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: dhd:Dhaf_2627 extracellular solute-binding protein family 1; PFAM: extracellular solute-binding protein family 1; SPTR: Q24XF8 Putative uncharacterized protein; PFAM: Bacterial extracellular solute-binding protein.
       0.531
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.