STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_0818Adenylate cyclase; InterPro IPR008172; KEGG: tne:Tneu_0067 adenylyl cyclase CyaB; PFAM: adenylate cyclase; SPTR: B1YA51 Adenylyl cyclase CyaB; PFAM: CYTH domain. (181 aa)    
Predicted Functional Partners:
Krac_0819
Radical SAM domain protein; COGs: COG1533 DNA repair photolyase; InterPro IPR007197; KEGG: sit:TM1040_1469 radical SAM family protein; PFAM: Radical SAM domain protein; SPTR: Q1GGL4 Radical SAM; PFAM: Radical SAM superfamily.
       0.773
Krac_0820
Transcriptional regulator, DeoR family; COGs: COG2390 Transcriptional regulator contains sigma factor-related N-terminal domain; InterPro IPR007324; KEGG: bpu:BPUM_1428 transcriptional regulator; PFAM: putative sugar-binding domain protein; SPTR: A8FCZ4 Transcriptional regulator; PFAM: Putative sugar-binding domain.
       0.461
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.