STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_0926KEGG: ere:EUBREC_0961 hypothetical protein; SPTR: C4ZFZ1 Putative uncharacterized protein. (274 aa)    
Predicted Functional Partners:
Krac_0925
KEGG: ere:EUBREC_0962 hypothetical protein; SPTR: C4ZFZ2 Putative uncharacterized protein.
      0.812
Krac_0924
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: ere:EUBREC_0963 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C4ZFZ3 Putative uncharacterized protein; PFAM: ABC transporter.
       0.773
Krac_0927
Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011006:IPR001867; KEGG: cpy:Cphy_1676 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C0EC39 Putative uncharacterized protein; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
       0.414
Krac_0928
COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467:IPR003660:IPR004358:IPR003594:IPR 006162:IPR009082:IPR003661; KEGG: cpy:Cphy_1677 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SPTR: C0EC38 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (p [...]
       0.414
Krac_0929
Hypothetical protein; KEGG: ace:Acel_0600 cytochrome bd ubiquinol oxidase, subunit I; SPTR: A0LSG3 Cytochrome bd ubiquinol oxidase, subunit I.
       0.414
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.