STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_0947WD40 repeat, subgroup; InterProIPR019782:IPR017986:IPR015943:IPR019775:IPR 011046:IPR001680:IPR019781; KEGG: WD repeat protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; SPTR: Q7SCM7 Putative uncharacterized protein; PFAM: WD domain, G-beta repeat. (93 aa)    
Predicted Functional Partners:
EFH90422.1
WD40 repeat, subgroup; COGs: COG2319 FOG: WD40 repeat; InterProIPR011046:IPR019782:IPR017986:IPR015943:IPR 019775:IPR019781:IPR001680; KEGG: npu:Npun_F1222 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; SPTR: B8MUZ3 WD repeat-containing protein, putative; PFAM: WD domain, G-beta repeat.
 
  
  0.820
Krac_1629
COGs: COG2319 FOG: WD40 repeat; InterPro IPR015943:IPR011044:IPR001680; KEGG: npu:Npun_F1222 WD-40 repeat-containing protein; SPTR: A0YMI4 WD-40 repeat protein; PFAM: WD domain, G-beta repeat.
 
  
  0.820
Krac_9034
WD40 repeat, subgroup; COGs: COG2319 FOG: WD40 repeat; InterProIPR019781:IPR019782:IPR017986:IPR011046:IPR 001680:IPR015943; KEGG: npu:Npun_F1222 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; SPTR: A0YMI4 WD-40 repeat protein; PFAM: WD domain, G-beta repeat.
 
  
  0.820
Krac_9083
WD40 repeat domain containing protein; COGs: COG2319 FOG: WD40 repeat; InterPro IPR001680:IPR015943; KEGG: npu:Npun_F1222 WD-40 repeat-containing protein; SPTR: B4VNK4 Putative uncharacterized protein; PFAM: Eukaryotic translation initiation factor eIF2A.
 
  
  0.819
EFH88736.1
Signal transduction histidine kinase with CheB and CheR activity; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterProIPR000673:IPR000780:IPR013656:IPR003661:IPR 003594:IPR005467:IPR009082:IPR002052; KEGG: ava:Ava_0314 signal transduction histidine kinase (STHK) with CheB and CheR activity; PFAM: ATP-binding region ATPase domain protein; CheB methylesterase; MCP methyltransferase CheR-type; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: MCP methyltransferase CheR-type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; [...]
  
 0.790
EFH88743.1
Signal transduction histidine kinase with CheB and CheR activity; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterProIPR000673:IPR000780:IPR013656:IPR003661:IPR 003594:IPR005467:IPR009082; KEGG: ava:Ava_0314 signal transduction histidine kinase (STHK) with CheB and CheR activity; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CheB methylesterase; MCP methyltransferase CheR-type; PAS fold-4 domain protein; SMART: MCP methyltransferase CheR-type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SPTR: Q3M [...]
  
 0.790
Krac_0945
COGs: COG0515 Serine/threonine protein kinase; InterProIPR000719:IPR019782:IPR017986:IPR015943:IPR 017441:IPR019775:IPR011009:IPR011046:IPR020635:IPR002290:I PR001680:IPR017442:IPR019781; KEGG: chl:Chy400_2868 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; WD40 repeat, subgroup; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; WD-40 repeat protein; SPTR: B9LLA2 Serine/threonine protein kinase; PFAM: Protein kinase domain; WD domain, G-beta repeat.
 
    
0.780
Krac_5734
WD40 repeat, subgroup; COGs: COG2319 FOG: WD40 repeat; InterProIPR015943:IPR002052:IPR019775:IPR011046:IPR 019782:IPR017986:IPR019781:IPR001680; KEGG: hypothetical protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; SPTR: B0E4G5 Predicted protein (Fragment); PFAM: WD domain, G-beta repeat.
  
     0.775
Krac_7669
WD40 repeat, subgroup; COGs: COG2319 FOG: WD40 repeat; InterProIPR001680:IPR015943:IPR019782:IPR017986:IPR 019781:IPR011046:IPR019775; KEGG: app:CAP2UW1_2609 WD-40 repeat protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; SPTR: C7RS72 WD-40 repeat protein; PFAM: WD domain, G-beta repeat.
  
     0.775
Krac_5754
WD40 repeat, subgroup; COGs: COG2319 FOG: WD40 repeat; InterProIPR015943:IPR011044:IPR019782:IPR017986:IPR 019781:IPR011659:IPR001680; KEGG: hypothetical protein; PFAM: WD40 repeat, subgroup; WD40 domain protein beta Propeller; SPTR: A7EAT8 Putative uncharacterized protein; PFAM: WD domain, G-beta repeat; WD40-like Beta Propeller Repeat.
  
     0.774
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.