STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_0973Hypothetical protein; InterPro IPR017853; KEGG: cai:Caci_4289 cellulose-binding family II; SPTR: C7QJR5 Cellulose-binding family II. (594 aa)    
Predicted Functional Partners:
Krac_4657
Glycoside hydrolase family 10; COGs: COG3693 Beta-1 4-xylanase; InterProIPR001919:IPR017970:IPR001000:IPR013781:IPR 012291:IPR017853:IPR008965; KEGG: cai:Caci_4414 glycoside hydrolase family 10; PFAM: glycoside hydrolase family 10; cellulose-binding family II; SMART: glycoside hydrolase family 10; cellulose-binding family II; SPTR: C4RMC7 Beta-1,4-xylanase; PFAM: Cellulose binding domain; Glycosyl hydrolase family 10.
  
 
 0.743
Krac_0972
Serine/threonine protein kinase with WD40 repeats; COGs: COG2319 FOG: WD40 repeat; InterProIPR000719:IPR019782:IPR017986:IPR020472:IPR 015943:IPR002052:IPR019775:IPR011046:IPR011009:IPR020635:I PR002290:IPR001680:IPR017442:IPR019781; KEGG: tcu:Tcur_0419 serine/threonine protein kinase with WD40 repeats; PFAM: WD40 repeat, subgroup; Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; WD-40 repeat protein; SPTR: D1A2J7 Serine/threonine protein kinase with WD40 repeats; PFAM: Protein kinase domain; WD do [...]
       0.634
Krac_2179
COGs: COG1904 Glucuronate isomerase; InterPro IPR003766; KEGG: npu:Npun_F5333 glucuronate isomerase HrmI; PFAM: Glucuronate isomerase; PRIAM: Glucuronate isomerase; SPTR: Q9KHA1 Uronate isomerase; PFAM: Glucuronate isomerase.
     
 0.567
Krac_0976
Glycoside hydrolase family 5; COGs: COG2730 Endoglucanase; InterProIPR001956:IPR013781:IPR018087:IPR017853:IPR 008965:IPR001547; KEGG: ace:Acel_0614 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 5; type 3a cellulose-binding domain protein; SPTR: P54583 Endoglucanase E1; PFAM: Cellulose binding domain; Cellulase (glycosyl hydrolase family 5).
  
 
 0.550
Krac_0974
COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: mva:Mvan_4863 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: A1TEN6 Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2.
  
    0.530
Krac_1420
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.524
Krac_1702
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.524
Krac_2906
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.524
Krac_3958
KEGG: mms:mma_2470 hypothetical protein; SPTR: A6T0W3 Uncharacterized conserved protein.
     
 0.495
Krac_2198
Glycoside hydrolase family 30; COGs: COG5520 O-Glycosyl hydrolase; InterPro IPR013781:IPR001139:IPR017853; KEGG: cai:Caci_3714 glucan endo-1,6-beta-glucosidase; PFAM: glycoside hydrolase family 30; SPTR: C7QBZ7 Glucan endo-1,6-beta-glucosidase; PFAM: O-Glycosyl hydrolase family 30; Belongs to the glycosyl hydrolase 30 family.
     
 0.443
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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