STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_0984Zinc finger UBP-type protein; InterPro IPR001607; KEGG: gvi:gsr4153 hypothetical protein; PFAM: zinc finger UBP-type protein; SMART: zinc finger UBP-type protein; SPTR: B4V625 Zinc finger protein; PFAM: Zn-finger in ubiquitin-hydrolases and other protein. (86 aa)    
Predicted Functional Partners:
EFH90584.1
Sodium/hydrogen exchanger; COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR006153; KEGG: mar:MAE_36160 Na+/H+ exchanger; PFAM: sodium/hydrogen exchanger; SPTR: B0JNK8 Eukaryotic Na+/H+ exchanger; PFAM: Sodium/hydrogen exchanger family.
      0.901
Krac_0986
Response regulator receiver protein; COGs: COG0492 Thioredoxin reductase; InterPro IPR001789:IPR000103:IPR013027:IPR011006; KEGG: gvi:glr0480 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; response regulator receiver; SMART: response regulator receiver; SPTR: Q7NND1 Thioredoxin reductase carring response regulator receiver domain; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Response regulator receiver domain.
 
     0.885
Krac_0985
Histidine kinase; COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR000595:IPR005467:IPR004358:IPR014710:IPR 003594:IPR018490; KEGG: gvi:gll1662 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; cyclic nucleotide-binding; SMART: ATP-binding region ATPase domain protein; cyclic nucleotide-binding; SPTR: Q7NK18 Gll1662 protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Cyclic nucleotide-binding domain.
 
     0.803
Krac_5346
Cyclic nucleotide-binding protein; COGs: COG0492 Thioredoxin reductase; InterProIPR000595:IPR013027:IPR018490:IPR000103:IPR 014710; KEGG: sro:Sros_4028 thioredoxin-disulfide reductase; PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: cyclic nucleotide-binding; SPTR: C4EGL0 Cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Cyclic nucleotide-binding domain.
  
     0.688
Krac_5995
Cyclic nucleotide-binding protein; COGs: COG0492 Thioredoxin reductase; InterProIPR014710:IPR018490:IPR000595:IPR013027:IPR 000103; KEGG: sro:Sros_4028 thioredoxin-disulfide reductase; PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: cyclic nucleotide-binding; SPTR: C4EGL0 Cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Cyclic nucleotide-binding domain.
  
     0.687
Krac_0308
Response regulator receiver protein; COGs: COG0492 Thioredoxin reductase; InterPro IPR001789:IPR011006:IPR000103:IPR013027; KEGG: gvi:glr0480 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; response regulator receiver; PRIAM: Thioredoxin-disulfide reductase; SMART: response regulator receiver; SPTR: Q7NND1 Thioredoxin reductase carring response regulator receiver domain; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Response regulator receiver domain.
  
     0.600
Krac_1564
Response regulator receiver protein; COGs: COG0492 Thioredoxin reductase; InterPro IPR001789:IPR013027:IPR011006:IPR000103; KEGG: gvi:glr0480 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; response regulator receiver; SMART: response regulator receiver; SPTR: Q7NND1 Thioredoxin reductase carring response regulator receiver domain; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Response regulator receiver domain.
  
     0.595
EFH89765.1
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR011006:IPR011009:IPR001789; KEGG: swo:Swol_1796 hypothetical protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q0AW10 Anti-sigma factor antagonist; PFAM: Response regulator receiver domain; Phosphotransferase enzyme family.
    
  0.481
EFH90279.1
Dual specificity protein phosphatase; InterPro IPR020422:IPR000340:IPR000387; KEGG: mxa:MXAN_0448 dual specificity phosphatase; PFAM: Dual specificity protein phosphatase; SMART: Dual specificity phosphatase, subgroup, catalytic domain; SPTR: Q1DF55 Dual specificity phosphatase; PFAM: Dual specificity phosphatase, catalytic domain.
    
  0.481
Krac_5529
InterPro IPR000387; KEGG: cpi:Cpin_1546 dual specificity protein phosphatase; SPTR: A7C574 Protein-tyrosine phosphatase.
    
  0.481
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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