STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH88860.1COGs: COG3586 conserved hypothetical protein; KEGG: mmr:Mmar10_0164 hypothetical protein; SPTR: Q1K1M9 Putative uncharacterized protein. (504 aa)    
Predicted Functional Partners:
EFH88861.1
Restriction modification system DNA specificity domain protein; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356:IPR000055:IPR002296; KEGG: mfe:Mefer_0543 N-6 DNA methylase; PFAM: restriction modification system DNA specificity domain; N-6 DNA methylase; SPTR: C7P732 N-6 DNA methylase; PFAM: N-6 DNA Methylase; Type I restriction modification DNA specificity domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type.
  
  
 0.804
EFH88862.1
Helicase domain protein; InterPro IPR001650:IPR014001; KEGG: hau:Haur_2539 helicase domain-containing protein; PFAM: helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; SPTR: A9B068 Helicase domain protein; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
       0.615
EFH88863.1
Eco57I restriction endonuclease; InterPro IPR002052:IPR011639:IPR002296; KEGG: hau:Haur_2540 hypothetical protein; PFAM: Eco57I restriction endonuclease; SPTR: A9B069 Putative uncharacterized protein; PFAM: Eco57I restriction endonuclease.
       0.615
Krac_8705
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 
 0.467
EFH88859.1
KAP P-loop domain protein; COGs: COG4249 Uncharacterized protein containing caspase domain; InterPro IPR001014:IPR011600:IPR011646; KEGG: mar:MAE_02750 hypothetical protein; PFAM: KAP P-loop domain protein; peptidase C14 caspase catalytic subunit p20; SPTR: B0JMT3 Putative uncharacterized protein; PFAM: Caspase domain; KAP family P-loop domain.
       0.422
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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