STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_1057Putative F420-dependent enzyme; InterPro IPR011576:IPR019966:IPR009002; KEGG: fal:FRAAL6644 hypothetical protein; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: Q0RBB9 Putative uncharacterized protein; TIGRFAM: putative F420-dependent enzyme; PFAM: Pyridoxamine 5'-phosphate oxidase; TIGRFAM: PPOX class probable F420-dependent enzyme, Rv3369 family. (146 aa)    
Predicted Functional Partners:
Krac_1058
NIPSNAP family containing protein; InterPro IPR012577; KEGG: mlo:mll8176 hypothetical protein; PFAM: NIPSNAP family containing protein; SPTR: A8TK42 Putative uncharacterized protein; PFAM: NIPSNAP.
       0.773
Krac_1059
Transcriptional regulator, HxlR family; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: dde:Dde_1352 putative transcriptional regulator; PFAM: helix-turn-helix HxlR type; SPTR: C1SMX0 Predicted transcriptional regulator; PFAM: HxlR-like helix-turn-helix.
       0.525
Krac_1211
Protein of unknown function DUF1731; COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR001509:IPR013549:IPR010099:IPR016040; KEGG: dma:DMR_23240 hypothetical protein; PFAM: domain of unknown function DUF1731; NAD-dependent epimerase/dehydratase; SPTR: C4XSX3 Putative uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777.
   
    0.487
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.