STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH89219.1TPR repeat-containing protein; InterPro IPR019734:IPR013026:IPR011990:IPR001440; KEGG: hau:Haur_1045 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: A9AZY6 TPR repeat-containing protein; PFAM: Tetratricopeptide repeat. (272 aa)    
Predicted Functional Partners:
Krac_8832
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: mxa:MXAN_4640 sensor histidine kinase/response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q1D3G7 Sensor protein; PFAM: Response regulator receiver domain.
    
 0.741
EFH90816.1
COGs: COG2178 RNA-binding protein of the translin family; InterPro IPR002848; KEGG: sti:Sthe_0893 translin; PFAM: Translin; SPTR: D1C263 Translin; PFAM: Translin family.
  
 
   0.736
Krac_8372
KEGG: hau:Haur_1905 hypothetical protein; SPTR: A9AUM1 Putative uncharacterized protein.
  
   0.730
Krac_7802
Glycosyl transferase family 39; COGs: COG4745 membrane-bound mannosyltransferase; InterPro IPR003342:IPR019962; KEGG: ttr:Tter_1036 membrane-bound mannosyltransferase-like protein; PFAM: glycosyl transferase family 39; SPTR: D1CG96 Membrane-bound mannosyltransferase-like protein; TIGRFAM: conserved hypothetical protein TIGR03663.
  
     0.716
Krac_9408
COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789; KEGG: rmr:Rmar_0513 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: D0MEW5 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain.
   
 0.707
Krac_8023
InterPro IPR018711; KEGG: rrs:RoseRS_1115 hypothetical protein; PFAM: Protein of unknown function DUF2233, periplasmic; SPTR: A5USB9 Putative uncharacterized protein; PFAM: Predicted periplasmic protein (DUF2233).
  
     0.703
EFH88736.1
Signal transduction histidine kinase with CheB and CheR activity; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterProIPR000673:IPR000780:IPR013656:IPR003661:IPR 003594:IPR005467:IPR009082:IPR002052; KEGG: ava:Ava_0314 signal transduction histidine kinase (STHK) with CheB and CheR activity; PFAM: ATP-binding region ATPase domain protein; CheB methylesterase; MCP methyltransferase CheR-type; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: MCP methyltransferase CheR-type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; [...]
  
 0.702
EFH88743.1
Signal transduction histidine kinase with CheB and CheR activity; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterProIPR000673:IPR000780:IPR013656:IPR003661:IPR 003594:IPR005467:IPR009082; KEGG: ava:Ava_0314 signal transduction histidine kinase (STHK) with CheB and CheR activity; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CheB methylesterase; MCP methyltransferase CheR-type; PAS fold-4 domain protein; SMART: MCP methyltransferase CheR-type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SPTR: Q3M [...]
  
 0.702
Krac_7646
Conserved hypothetical protein; COGs: COG0392 integral membrane protein; InterPro IPR005242; KEGG: hau:Haur_4436 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: A9AZ28 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein.
  
     0.700
EFH88776.1
LmbE family protein; InterPro IPR003737; KEGG: sti:Sthe_1973 LmbE family protein; PFAM: LmbE family protein; SPTR: B9LB67 LmbE family protein; manually curated; PFAM: GlcNAc-PI de-N-acetylase.
  
     0.690
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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