STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
xylBXylulokinase; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018483:IPR018484:IPR018485:IPR006000; KEGG: dtu:Dtur_0920 xylulokinase; PFAM: Carbohydrate kinase, FGGY-like; SPTR: B8E173 Xylulokinase; TIGRFAM: xylulokinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: D-xylulose kinase. (512 aa)    
Predicted Functional Partners:
EFH89700.1
COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR011060:IPR000056:IPR013785; KEGG: bcg:BCG9842_B1284 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: C3BNT6 Ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase.
 
  
 0.916
xylA
COGs: COG2115 Xylose isomerase; InterPro IPR013022:IPR012307:IPR013453:IPR001998; KEGG: ttr:Tter_0987 xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; PRIAM: Xylose isomerase; SPTR: D1CG47 Xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase, Arthrobacter type; Belongs to the xylose isomerase family.
 
 
 0.905
xylA-2
COGs: COG2115 Xylose isomerase; InterPro IPR013022:IPR001998:IPR013453:IPR012307; KEGG: ttr:Tter_0987 xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; PRIAM: Xylose isomerase; SPTR: D1CG47 Xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase, Arthrobacter type; Belongs to the xylose isomerase family.
 
 
 0.905
Krac_0640
Class II aldolase/adducin family protein; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: afo:Afer_1874 class II aldolase/adducin family protein; PFAM: class II aldolase/adducin family protein; SPTR: B7DQN7 Class II aldolase/adducin family protein; PFAM: Class II Aldolase and Adducin N-terminal domain.
  
 
 0.847
Krac_4702
Protein of unknown function DUF718; COGs: COG3254 conserved hypothetical protein; InterPro IPR008000; KEGG: sit:TM1040_3394 hypothetical protein; PFAM: protein of unknown function DUF718; SPTR: C8SFU8 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF718).
  
  
 0.775
Krac_4279
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; COGs: COG3347 conserved hypothetical protein; InterProIPR013454:IPR001303:IPR002198:IPR016040:IPR 002347; KEGG: bsu:BSU31220 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; class II aldolase/adducin family protein; SPTR: P40747 Uncharacterized oxidoreductase yuxG; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
  
 
 0.759
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
  
0.642
Krac_5799
KEGG: ttr:Tter_1909 xylose isomerase domain protein TIM barrel; SPTR: D1CGE4 Xylose isomerase domain protein TIM barrel.
  
 
  0.592
EFH89022.1
Transketolase domain protein; COGs: COG0021 Transketolase; InterProIPR020826:IPR005474:IPR005475:IPR005476:IPR 009014:IPR015941; KEGG: ttr:Tter_0415 transketolase central region; PFAM: Transketolase domain protein; Transketolase central region; SPTR: D1CEI0 Transketolase central region; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase.
  
 
 0.581
EFH89695.1
Transketolase; COGs: COG0021 Transketolase; InterProIPR009014:IPR000276:IPR020826:IPR005478:IPR 005474:IPR005475:IPR005476:IPR015941; KEGG: dal:Dalk_2752 transketolase; PFAM: Transketolase domain protein; Transketolase central region; SPTR: B8FKS2 Transketolase; TIGRFAM: transketolase; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: transketolase, bacterial and yeast; Belongs to the transketolase family.
  
 
 0.581
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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