STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH89446.1Major facilitator superfamily MFS_1; InterPro IPR016196:IPR011701; KEGG: ara:Arad_3186 transporter protein; PFAM: major facilitator superfamily MFS_1; SPTR: B9J789 Transporter protein; PFAM: Bacterial protein of unknown function (DUF894). (405 aa)    
Predicted Functional Partners:
Krac_4460
Major facilitator superfamily MFS_1; InterPro IPR016196:IPR011701; KEGG: tro:trd_A0314 permease of the major facilitator superfamily; PFAM: major facilitator superfamily MFS_1; SPTR: B9L3F1 Permease of the major facilitator superfamily; PFAM: Bacterial protein of unknown function (DUF894).
  
     0.774
Krac_4672
InterPro IPR016196:IPR011701; KEGG: npu:Npun_F4674 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: B2IXX1 Major facilitator superfamily MFS_1; PFAM: Bacterial protein of unknown function (DUF894).
  
     0.660
EFH89445.1
Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: ade:Adeh_0542 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: Q2IND9 Transcriptional regulator, LysR family; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family.
       0.537
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.