STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH89532.1Putative thiol-disulfide oxidoreductase DCC; InterPro IPR007263; KEGG: hau:Haur_3193 hypothetical protein; PFAM: putative thiol-disulphide oxidoreductase DCC; SPTR: A9B6W2 Putative uncharacterized protein; PFAM: Protein of unknown function, DUF393. (142 aa)    
Predicted Functional Partners:
EFH90016.1
CRISPR-associated helicase, Cyano-type; InterPro IPR014021:IPR001650:IPR014001:IPR017575; KEGG: hau:Haur_2231 helicase superfamily protein; SMART: DEAD-like helicase; SPTR: A9AX63 Helicase superfamily 1 and 2 ATP-binding; TIGRFAM: CRISPR-associated helicase, Cyano-type; PFAM: DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase, Cyano-type.
  
     0.513
argD
COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterProIPR015424:IPR005814:IPR004636:IPR015422:IPR 015421; KEGG: det:DET1258 acetylornithine aminotransferase; PFAM: aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Q3Z729 Acetylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
       0.510
Krac_8332
Protein of unknown function DUF790; COGs: COG3372 conserved hypothetical protein; InterPro IPR008508; KEGG: hau:Haur_0099 hypothetical protein; PFAM: protein of unknown function DUF790; SPTR: A9B5C6 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF790).
  
     0.411
EFH89473.1
CHAP domain containing protein; COGs: COG3942 Surface antigen; InterPro IPR007921; KEGG: saa:SAUSA300_pUSA0316 transfer complex protein TraG; PFAM: CHAP domain containing protein; SPTR: C4WCV1 N-acetylmuramoyl-L-alanine amidase; PFAM: CHAP domain.
  
     0.409
Krac_9626
Transposase IS4 family protein; COGs: COG3666 Transposase and inactivated derivatives; KEGG: npu:Npun_DF046 transposase IS4 family protein; SPTR: B2JC10 Transposase IS4 family protein; PFAM: Transposase domain (DUF772).
  
     0.404
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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