STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH89563.1TPR repeat-containing protein; InterProIPR019734:IPR013026:IPR013105:IPR001440:IPR 011717:IPR011990; KEGG: cyh:Cyan8802_1328 peptidase S1 and S6 chymotrypsin/Hap; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide repeat; SPTR: C7QP60 Peptidase S1 and S6 chymotrypsin/Hap; PFAM: Tetratricopeptide repeat. (484 aa)    
Predicted Functional Partners:
Krac_6979
Undecaprenyl-phosphate galactose phosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: dth:DICTH_0737 undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: B5YDJ8 Undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase.
  
 
 0.951
Krac_7829
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR016040:IPR003362:IPR017475; KEGG: tro:trd_A0816 undecaprenyl-phosphate glucose phosphotransferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: B9L4V2 Undecaprenyl-phosphate glucose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransfer [...]
  
 
 0.951
EFH89617.1
TPR repeat-containing protein; InterPro IPR019734:IPR013026:IPR001440:IPR011990; KEGG: TPR Domain containing protein; PFAM: TPR repeat-containing protein; SPTR: A0YWU0 TPR repeat protein; PFAM: Tetratricopeptide repeat.
 
  0.902
EFH90727.1
TPR repeat-containing protein; InterProIPR019734:IPR013026:IPR001440:IPR011717:IPR 013105:IPR011990; KEGG: rca:Rcas_3987 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; SPTR: A7NR24 Tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide repeat.
 
  
 0.841
Krac_8437
COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: mno:Mnod_3023 polysaccharide deacetylase; PFAM: glycosyl transferase family 2; SPTR: B0VJ62 Putative uncharacterized protein; PFAM: Glycosyl transferase family 2.
  
 0.836
Krac_4708
TPR repeat-containing protein; InterProIPR019734:IPR013026:IPR011990:IPR013105:IPR 001440; KEGG: mar:MAE_03610 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; SPTR: D1J927 Putative uncharacterized protein; PFAM: Tetratricopeptide repeat.
 
  0.801
EFH89515.1
Nucleotidyl transferase; COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterProIPR011004:IPR016055:IPR017441:IPR005835:IPR 001451:IPR005844:IPR005845; KEGG: cag:Cagg_3774 nucleotidyl transferase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; SPTR: B8GB10 Nucleotidyl transferase; P [...]
  
 
 0.799
EFH90957.1
TPR repeat-containing protein; InterProIPR019734:IPR013026:IPR011990:IPR001440:IPR 013105; KEGG: mar:MAE_03610 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SPTR: B0JN19 Tetratricopeptide repeat protein; PFAM: Tetratricopeptide repeat.
 
  0.794
Krac_8832
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: mxa:MXAN_4640 sensor histidine kinase/response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q1D3G7 Sensor protein; PFAM: Response regulator receiver domain.
  
 0.794
EFH89616.1
Tetratricopeptide TPR_2 repeat protein; COGs: COG3063 Tfp pilus assembly protein PilF; InterProIPR019734:IPR013026:IPR001440:IPR013105:IPR 011990; KEGG: sro:Sros_3430 hypothetical protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: C4ERW5 Flp pilus assembly protein TadD; PFAM: Tetratricopeptide repeat.
 
    0.766
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.