STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
EFH89619.1Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. (228 aa)    
Predicted Functional Partners:
EFH89618.1
RNA methyltransferase, TrmA family; COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR010280:IPR001566; KEGG: ttr:Tter_2704 RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; PRIAM: tRNA (uracil-5-)-methyltransferase; SPTR: D1C8F3 RNA methyltransferase, TrmA family; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
     0.971
EFH89165.1
COGs: COG2003 DNA repair protein; InterPro IPR001405; KEGG: rca:Rcas_0037 DNA repair protein RadC; PFAM: DNA repair protein RadC; SPTR: A7NFF4 UPF0758 protein Rcas_0037; TIGRFAM: DNA repair protein RadC; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc; Belongs to the UPF0758 family.
 
  
 0.857
EFH90756.1
COGs: COG2003 DNA repair protein; KEGG: rca:Rcas_0037 DNA repair protein RadC; SPTR: A7NFF4 UPF0758 protein Rcas_0037; TIGRFAM: DNA repair protein radc.
 
  
 0.843
Krac_8761
COGs: COG3483 Tryptophan 2 3-dioxygenase (vermilion); InterPro IPR004981; KEGG: plu:plu1434 hypothetical protein; PFAM: tryptophan 23-dioxygenase; SPTR: Q2B8C5 Putative uncharacterized protein; PFAM: Tryptophan 2,3-dioxygenase.
    
   0.778
EFH90414.1
RNA methyltransferase, TrmA family; COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR016027:IPR002792:IPR010280:IPR001566; KEGG: sth:STH2818 RNA methyltransferase; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; SPTR: Q67KJ5 RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; manually curated; PFAM: TRAM domain; tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methylt [...]
     0.753
EFH89617.1
TPR repeat-containing protein; InterPro IPR019734:IPR013026:IPR001440:IPR011990; KEGG: TPR Domain containing protein; PFAM: TPR repeat-containing protein; SPTR: A0YWU0 TPR repeat protein; PFAM: Tetratricopeptide repeat.
       0.655
EFH90428.1
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
 
    0.594
EFH90847.1
COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterProIPR004559:IPR007197:IPR010723:IPR006638:IPR 013785; KEGG: ttr:Tter_1363 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; PRIAM: Coproporphyrinogen dehydrogenase; SMART: Elongator protein 3/MiaB/NifB; SPTR: D1CBV5 Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; B [...]
 
   
 0.555
EFH89616.1
Tetratricopeptide TPR_2 repeat protein; COGs: COG3063 Tfp pilus assembly protein PilF; InterProIPR019734:IPR013026:IPR001440:IPR013105:IPR 011990; KEGG: sro:Sros_3430 hypothetical protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: C4ERW5 Flp pilus assembly protein TadD; PFAM: Tetratricopeptide repeat.
       0.503
EFH89218.1
RNA modification enzyme, MiaB family; COGs: COG0621 2-methylthioadenine synthetase; InterProIPR002792:IPR013848:IPR006638:IPR013785:IPR 007197:IPR005839:IPR006463; KEGG: sti:Sthe_1020 RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: D1C2I9 RNA modification enzyme, MiaB family; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0 [...]
 
     0.487
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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