STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH89855.1Extracellular solute-binding protein family 1; COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: aau:AAur_4081 putative extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C9Z4Q9 Probable solute-binding lipoprotein; PFAM: Bacterial extracellular solute-binding protein. (444 aa)    
Predicted Functional Partners:
EFH89854.1
COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: kra:Krad_4189 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A6WFR3 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  0.990
EFH89853.1
Binding-protein-dependent transport systems inner membrane component; COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515:IPR006162; KEGG: bcv:Bcav_3302 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C9Z4Q7 Putative integral membrane transport protein; PFAM: Binding-protein-dependent transport system inner membrane component.
  0.910
Krac_3693
Binding-protein-dependent transport systems inner membrane component; COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: bfa:Bfae_04090 carbohydrate ABC transporter membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C4DK33 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  0.847
Krac_3692
COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: cmi:CMM_2107 putative sugar ABC transporter, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A5CSV2 Putative sugar ABC transporter, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
  
  0.845
Krac_5191
COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: jde:Jden_0380 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C9Z4Q7 Putative integral membrane transport protein; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  0.844
Krac_5190
COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: jde:Jden_0379 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C7QZP2 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
  
  0.843
Krac_0446
Extracellular solute-binding protein family 1; COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR017909:IPR019546:IPR006059:IPR006311; KEGG: ttr:Tter_1095 extracellular solute-binding protein family 1; PFAM: extracellular solute-binding protein family 1; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: D1CB46 Extracellular solute-binding protein family 1; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.707
Krac_5275
COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: gym:GYMC10_3832 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: D1CIG3 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
  
  0.629
EFH90569.1
ABC transporter related protein; COGs: COG3839 ABC-type sugar transport systems ATPase components; InterProIPR008995:IPR003439:IPR017871:IPR005116:IPR 003593; KEGG: ate:Athe_1803 ABC transporter related; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; SPTR: B9MKN8 ABC transporter related; PFAM: ABC transporter; TOBE domain.
  
 0.623
EFH89096.1
COGs: COG1874 Beta-galactosidase; InterProIPR003476:IPR013529:IPR013738:IPR013739:IPR 017853:IPR013781; KEGG: gyc:GYMC61_0530 beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; PRIAM: Beta-galactosidase; SPTR: C1PBJ3 Beta-galactosidase; PFAM: Beta-galactosidase trimerisation domain; Beta-galactosidase C-terminal domain; Beta-galactosidase.
  
     0.615
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.