STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH89994.1KEGG: ava:Ava_B0254 hypothetical protein; SPTR: Q3MFZ0 Putative uncharacterized protein. (161 aa)    
Predicted Functional Partners:
EFH89995.1
Hypothetical protein; InterPro IPR009057; KEGG: npu:Npun_F6119 putative transposase; SPTR: B2IV15 Putative transposase.
       0.705
Krac_0400
Conserved hypothetical protein; InterPro IPR018130; KEGG: rrs:RoseRS_0893 hypothetical protein; SPTR: A5URQ0 Putative uncharacterized protein; PFAM: Transposase IS66 family.
  
     0.426
EFH88927.1
Conserved hypothetical protein; InterPro IPR018130; KEGG: rrs:RoseRS_0893 hypothetical protein; SPTR: A5URQ0 Putative uncharacterized protein; PFAM: Transposase IS66 family.
  
     0.426
Krac_2203
Conserved hypothetical protein; InterPro IPR018130; KEGG: rrs:RoseRS_0893 hypothetical protein; SPTR: A5URQ0 Putative uncharacterized protein; PFAM: Transposase IS66 family.
  
     0.426
Krac_4313
Conserved hypothetical protein; InterPro IPR018130; KEGG: rrs:RoseRS_0893 hypothetical protein; SPTR: A5URQ0 Putative uncharacterized protein; PFAM: Transposase IS66 family.
  
     0.426
Krac_4763
Conserved hypothetical protein; InterPro IPR018130; KEGG: rrs:RoseRS_0893 hypothetical protein; SPTR: A5URQ0 Putative uncharacterized protein; PFAM: Transposase IS66 family.
  
     0.426
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.