STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH90030.1CRISPR-associated protein, Cmr5 family; COGs: COG3337 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR010160; KEGG: tro:trd_A0112 crispr-associated protein, Cmr5 family; PFAM: CRISPR-associated protein TM1791.1; SPTR: B9L2U8 Crispr-associated protein, Cmr5 family; TIGRFAM: CRISPR-associated protein, Cmr5 family; PFAM: CRISPR-associated protein (Cas_Cmr5); TIGRFAM: CRISPR-associated protein, Cmr5 family. (152 aa)    
Predicted Functional Partners:
EFH90027.1
CRISPR-associated protein, Crm2 family; COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs); InterPro IPR000160:IPR013407; KEGG: dae:Dtox_2979 CRISPR-associated protein, Crm2 family; SPTR: C8W3E7 CRISPR-associated protein, Crm2 family; TIGRFAM: CRISPR-associated protein, Crm2 family; PFAM: CRISPR-associated protein; TIGRFAM: CRISPR-associated protein, Crm2 family.
 
 
 
 0.998
EFH90029.1
CRISPR-associated RAMP protein, Cmr4 family; COGs: COG1336 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537:IPR013410; KEGG: hor:Hore_15130 CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; SPTR: B8CY94 CRISPR-associated RAMP protein, Cmr4 family; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family.
 
 
 
 0.998
EFH90031.1
CRISPR-associated RAMP protein, Cmr6 family; COGs: COG1604 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537:IPR010172; KEGG: cts:Ctha_0942 CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; SPTR: C6PAV9 CRISPR-associated RAMP protein, Cmr6 family; TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family.
 
 
 
 0.997
EFH90026.1
CRISPR-associated RAMP protein, Cmr1 family; COGs: COG1367 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537:IPR007522; KEGG: tro:trd_A0116 crispr-associated protein, Cmr1 family, putative; PFAM: protein of unknown function DUF324; SPTR: B9L2V2 Crispr-associated protein, Cmr1 family, putative; TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family.
 
 
 
 0.982
EFH90028.1
CRISPR-associated protein, Cmr3 family; COGs: COG1769 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR019117:IPR010165; KEGG: tro:trd_A0114 crispr-associated protein, Cmr3 family; PFAM: CRISPR-associated protein, Cmr3; SPTR: B9L2V0 Crispr-associated protein, Cmr3 family; TIGRFAM: CRISPR-associated protein, Cmr3 family; PFAM: CRISPR-associated protein (Cas_Cmr3); TIGRFAM: CRISPR-associated protein, Cmr3 family.
 
   
 0.962
EFH90032.1
KEGG: rrs:RoseRS_3987 hypothetical protein; SPTR: A5V0D1 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1887).
       0.782
EFH90033.1
KEGG: tte:TTE2665 hypothetical protein; SPTR: Q8R6W8 Putative uncharacterized protein.
       0.779
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.620
EFH90025.1
Response regulator receiver protein; InterPro IPR016032:IPR019092:IPR011991; KEGG: rrs:RoseRS_1863 response regulator receiver protein; PFAM: CRISPR-assoc protein, NE0113/Csx13; SPTR: A5UUE9 Response regulator receiver protein; PFAM: CRISPR-associated protein NE0113 (Cas_NE0113); Bacterial regulatory proteins, luxR family; TIGRFAM: CRISPR-associated protein, NE0113 family.
       0.507
Krac_7804
Glycosyl transferase family 39; InterPro IPR003342; KEGG: sti:Sthe_1174 tetratricopeptide TPR_4; PFAM: glycosyl transferase family 39; SPTR: D1C2Z3 Tetratricopeptide TPR_4; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.452
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.