STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH90145.1COGs: COG1716 FOG: FHA domain; InterPro IPR000253:IPR008984; KEGG: PTB1; sodium/phosphate symporter; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: Q8LP68 Putative Pi-transporter homologue B1; PFAM: FHA domain. (435 aa)    
Predicted Functional Partners:
Krac_9408
COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789; KEGG: rmr:Rmar_0513 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: D0MEW5 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain.
  
 
 0.772
EFH89688.1
COGs: COG1716 FOG: FHA domain; InterPro IPR008984:IPR000253; KEGG: ttr:Tter_1426 FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: D1CC17 FHA domain containing protein; PFAM: FHA domain.
  
     0.736
Krac_4829
COGs: COG0642 Signal transduction histidine kinase; InterProIPR003594:IPR009082:IPR005467:IPR000014:IPR 000700:IPR004358:IPR001610:IPR003661:IPR013656:IPR013655; KEGG: rlg:Rleg_6856 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: C8SDN7 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: [...]
  
 
  0.728
Krac_6285
COGs: COG0642 Signal transduction histidine kinase; InterProIPR003594:IPR011006:IPR009082:IPR001789:IPR 013655:IPR003661:IPR000014:IPR001610:IPR004358:IPR005467:I PR000700; KEGG: rlg:Rleg_6856 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; SPTR: C8SDN7 PAS/PAC sensor sign [...]
  
 
  0.728
Krac_6537
Putative PAS/PAC sensor protein; COGs: COG2202 FOG: PAS/PAC domain; InterProIPR000014:IPR000700:IPR013767:IPR013656:IPR 013655:IPR001610; KEGG: aca:ACP_0447 sensory box sensor histidine kinase; PFAM: PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; SPTR: C8SDN7 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box.
  
 
  0.728
Krac_4981
COGs: COG5002 Signal transduction histidine kinase; InterProIPR003594:IPR009082:IPR005467:IPR000014:IPR 000700:IPR004358:IPR001610:IPR003661:IPR013767:IPR013656; KEGG: cyc:PCC7424_4549 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: B7KAD8 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine k [...]
  
 
  0.720
Krac_9928
COGs: COG5002 Signal transduction histidine kinase; InterProIPR003594:IPR009082:IPR005467:IPR000014:IPR 000700:IPR001610:IPR003661:IPR004358:IPR013767:IPR013656; KEGG: ttr:Tter_2374 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: D1CHQ0 Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS s [...]
  
 
  0.720
Krac_7546
COGs: COG0515 Serine/threonine protein kinase; InterPro IPR002290:IPR000719:IPR011009; KEGG: chl:Chy400_4120 serine/threonine protein kinase; SMART: serine/threonine protein kinase; SPTR: B9LGA6 Serine/threonine protein kinase.
 
 
   0.709
Krac_5239
Diguanylate cyclase; COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: maq:Maqu_0096 diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain containing protein; PRIAM: Diguanylate kinase; SMART: GGDEF domain containing protein; SPTR: A1TWT4 Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
 
  0.687
EFH89014.1
Putative methyl-accepting chemotaxis sensory transducer; KEGG: hau:Haur_1217 multi-sensor signal transduction histidine kinase; SPTR: A9B1I0 Sensor protein.
    
  0.684
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.