STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH90304.1CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. (185 aa)    
Predicted Functional Partners:
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
 
 
 0.980
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
   
 
 0.868
EFH90506.1
Primosome, DnaD subunit; InterPro IPR006343; KEGG: rca:Rcas_3989 primosome, DnaD subunit; PFAM: DnaD and phage-associated region; SPTR: A7NR26 Primosome, DnaD subunit; TIGRFAM: primosome, DnaD subunit; PFAM: Replication initiation and membrane attachment protein (DnaB); TIGRFAM: DnaD and phage-associated domain.
  
     0.766
EFH89091.1
TPR repeat-containing protein; InterProIPR013105:IPR001440:IPR019734:IPR013026:IPR 011990; KEGG: cag:Cagg_2812 tetratricopeptide TPR_2 repeat protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SPTR: B8G5G8 Tetratricopeptide TPR_2 repeat protein.
  
  
  0.750
EFH90247.1
KEGG: chl:Chy400_1101 hypothetical protein; SPTR: B9LAH6 Putative uncharacterized protein.
  
     0.739
EFH89261.1
Protein of unknown function DUF2085, transmembrane; COGs: COG3815 membrane protein; InterPro IPR018229:IPR019206; KEGG: tro:trd_0346 hypothetical protein; PFAM: Protein of unknown function DUF2085, transmembrane; SPTR: B9KY03 Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2085).
  
     0.716
EFH90727.1
TPR repeat-containing protein; InterProIPR019734:IPR013026:IPR001440:IPR011717:IPR 013105:IPR011990; KEGG: rca:Rcas_3987 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; SPTR: A7NR24 Tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide repeat.
  
     0.715
EFH90415.1
PASTA domain containing protein; InterPro IPR005543; KEGG: hau:Haur_3144 hypothetical protein; PFAM: PASTA domain containing protein; SPTR: A9B5Y8 Putative uncharacterized protein; PFAM: Bacterial membrane flanked domain; PASTA domain.
  
     0.691
EFH90630.1
KEGG: rrs:RoseRS_2140 hypothetical protein; SPTR: A5UV68 Putative uncharacterized protein.
  
  
  0.686
Krac_7566
KEGG: rca:Rcas_1731 hypothetical protein; SPTR: Q08UF7 Putative uncharacterized protein.
  
  
  0.684
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.