STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_1198Hypothetical protein; KEGG: AHCTF1; AT hook containing transcription factor 1; SPTR: Q54M77 Probable serine/threonine-protein kinase roco8. (90 aa)    
Predicted Functional Partners:
Krac_1196
Resolvase domain protein; COGs: COG2452 site-specific integrase-resolvase; InterPro IPR000551:IPR006119:IPR006118:IPR009061; KEGG: afr:AFE_1304 transposon, resolvase; PFAM: Resolvase domain; regulatory protein MerR; SPTR: A0ZLC9 Putative uncharacterized protein; PFAM: MerR family regulatory protein; Resolvase, N terminal domain; TIGRFAM: DNA binding domain, excisionase family.
       0.762
Krac_1197
InterPro IPR001959; KEGG: min:Minf_2377 transposon IS605 OrfB; PFAM: putative transposase IS891/IS1136/IS1341 family; SPTR: B3E0V4 Transposon IS605 OrfB; PFAM: Helix-turn-helix domain; Probable transposase.
       0.762
Krac_1195
COGs: COG3458 Acetyl esterase (deacetylase); InterPro IPR008391; KEGG: dth:DICTH_1987 xylan esterase 1; PFAM: Acetyl xylan esterase; SPTR: B5YCD5 Xylan esterase 1; PFAM: Acetyl xylan esterase (AXE1).
       0.464
Krac_1199
Hypothetical protein; InterPro IPR001412; KEGG: dvl:Dvul_1165 hypothetical protein; SPTR: Q72AD4 Putative uncharacterized protein.
       0.408
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.