STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (276 aa)    
Predicted Functional Partners:
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
 
 
 0.994
EFH88796.1
Small GTP-binding protein; COGs: COG1159 GTPase; InterPro IPR002917:IPR005225; KEGG: gym:GYMC10_6289 small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; SPTR: Q8EN44 Hypothetical conserved protein; TIGRFAM: small GTP-binding protein; PFAM: GTPase of unknown function; Domain of unknown function (DUF697); TIGRFAM: small GTP-binding protein domain.
  
  
 0.674
EFH89541.1
COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR004622; KEGG: hau:Haur_0791 DNA polymerase III, delta prime subunit; PRIAM: DNA-directed DNA polymerase; SPTR: A9AXM5 DNA polymerase III, delta prime subunit; TIGRFAM: DNA polymerase III, delta prime subunit; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III, delta' subunit.
 
 
 
 0.592
Krac_8519
COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR005790:IPR008921:IPR010372; KEGG: rrs:RoseRS_3075 DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; SPTR: A5UXT5 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit.
  
  
 0.569
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
 
  
 0.551
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
  
 
 
 0.549
Krac_6638
DNA polymerase III, epsilon subunit; COGs: COG1199 Rad3-related DNA helicase; InterProIPR012337:IPR014013:IPR013520:IPR006054:IPR 006055; KEGG: sti:Sthe_1001 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease RNase T and DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; SPTR: D1C2H0 Exonuclease RNase T and DNA polymerase III; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family.
 
  
 0.544
lexA
Transcriptional repressor, LexA family; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
 
   
 0.543
Krac_7954
ComEC/Rec2-related protein; InterPro IPR004477; KEGG: deh:cbdb_A29 DNA internalization-related competence protein,ComEC; PFAM: ComEC/Rec2-related protein; SPTR: D0Y8P6 DNA internalization-related competence protein ComEC/Rec2; manually curated; PFAM: Competence protein.
  
  
 0.532
EFH90844.1
COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424:IPR011344:IPR012340:IPR016027; KEGG: nmu:Nmul_A2227 single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: C6M2U3 Single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb).
   
 
 0.513
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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