STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH90388.1KEGG: sti:Sthe_2169 hypothetical protein; SPTR: D1C6H0 Putative uncharacterized protein. (792 aa)    
Predicted Functional Partners:
EFH90389.1
Zinc finger SWIM domain protein; InterPro IPR007527; KEGG: cur:cur_1570 putative helicase; PFAM: zinc finger SWIM domain protein; SPTR: C8NY74 ATP-dependent DNA helicase.
      
0.773
EFH89432.1
Helicase domain protein; COGs: COG1061 DNA or RNA helicase of superfamily II; InterProIPR014021:IPR001650:IPR014001:IPR001161:IPR 006935; KEGG: mta:Moth_1918 DEAD/DEAH box helicase-like; PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; SPTR: Q2RH71 DEAD/DEAH box helicase-like; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit.
  
     0.430
EFH90390.1
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.424
Krac_1782
InterPro IPR000182:IPR016181; KEGG: rrs:RoseRS_1431 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: A5UT76 GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
  
     0.416
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.