STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH90636.1KEGG: hau:Haur_2917 hypothetical protein; SPTR: A9B3I3 Putative uncharacterized protein. (403 aa)    
Predicted Functional Partners:
EFH90635.1
Transcriptional regulator, ArsR family; COGs: COG3860 conserved hypothetical protein; InterPro IPR001845:IPR018656:IPR011991; KEGG: dal:Dalk_1996 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; Protein of unknown function DUF2087; SMART: regulatory protein ArsR; SPTR: B8FG12 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family; Uncharacterized protein conserved in bacteria (DUF2087).
       0.538
Krac_8959
GCN5-related N-acetyltransferase; InterPro IPR016181:IPR000182; KEGG: fre:Franean1_5121 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C1WGG5 Acetyltransferase (GNAT) family protein; PFAM: Acetyltransferase (GNAT) family.
  
     0.476
Krac_0010
Transcriptional regulator, TetR family; InterPro IPR009057:IPR001647:IPR012287; KEGG: hch:HCH_02930 transcriptional regulator; SPTR: Q2SI22 Transcriptional regulator; PFAM: regulatory protein TetR; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.465
Krac_3726
InterPro IPR001647:IPR009057:IPR012287; KEGG: scl:sce4712 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C1WUY5 Transcriptional regulator, tetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.463
Krac_4071
Transcriptional regulator, TetR family; InterPro IPR001647:IPR012287:IPR009057; KEGG: hch:HCH_02930 transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C1WUY5 Transcriptional regulator, tetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.457
Krac_6462
Transcriptional regulator, TetR family; InterPro IPR009057:IPR001647:IPR012287; KEGG: hch:HCH_02930 transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C1WUY5 Transcriptional regulator, tetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.457
Krac_9581
Transcriptional regulator, PadR-like family; InterPro IPR011991:IPR005149; KEGG: lbr:LVIS_1807 transcriptional regulator; PFAM: transcriptional regulator PadR family protein; SPTR: Q08UR2 Putative transcriptional regulator; PFAM: Transcriptional regulator PadR-like family.
  
     0.435
EFH90637.1
Putative transposase IS891/IS1136/IS1341 family; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: cag:Cagg_3187 transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; SPTR: C1XIB4 Transposase, IS605 OrfB family, central region; PFAM: Helix-turn-helix domain; Putative transposase DNA-binding domain; Probable transposase.
       0.413
Krac_3903
KEGG: cai:Caci_1468 hypothetical protein; SPTR: C7Q9Z3 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF385); TIGRFAM: conserved hypothetical protein TIGR00026.
  
     0.413
Krac_6580
InterPro IPR004360; KEGG: sma:SAV_900 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Q82PK2 Putative uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
  
     0.406
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.