STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH90671.1Two component transcriptional regulator, LuxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR000792:IPR001789:IPR011991:IPR011006:IPR 016032; KEGG: rca:Rcas_4227 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: A7NRQ8 Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family. (221 aa)    
Predicted Functional Partners:
Krac_3333
COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594; KEGG: pfs:PFLU2939 putative two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; PRIAM: Histidine kinase; SPTR: C3KB27 Putative two-component system sensor kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.869
Krac_9018
COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003018:IPR011712:IPR003594:IPR005467; KEGG: rxy:Rxyl_2612 GAF sensor signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; GAF domain protein; ATP-binding region ATPase domain protein; PRIAM: Histidine kinase; SMART: GAF domain protein; SPTR: Q1ASU9 GAF sensor signal transduction histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain.
  0.846
Krac_9408
COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789; KEGG: rmr:Rmar_0513 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: D0MEW5 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain.
  
 0.837
Krac_3485
COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712; KEGG: rrs:RoseRS_4257 integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; PRIAM: Histidine kinase; SMART: ATP-binding region ATPase domain protein; SPTR: A5V147 Integral membrane sensor signal transduction histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.821
Krac_8832
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: mxa:MXAN_4640 sensor histidine kinase/response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q1D3G7 Sensor protein; PFAM: Response regulator receiver domain.
  
 0.820
Krac_7958
COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712:IPR005467; KEGG: sth:STH493 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PRIAM: Histidine kinase; SMART: ATP-binding region ATPase domain protein; SPTR: Q67S65 Two-component sensor histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.816
Krac_0914
COGs: COG4585 Signal transduction histidine kinase; InterProIPR005467:IPR003660:IPR004358:IPR003594:IPR 011712; KEGG: rxy:Rxyl_2810 putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; PRIAM: Histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SPTR: C3BJ53 Signal transduction histidine kinase; PFAM: Histidine kinase; HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.782
EFH88974.1
COGs: COG4585 Signal transduction histidine kinase; InterProIPR003660:IPR011712:IPR003594:IPR005467:IPR 004358; KEGG: rxy:Rxyl_2810 putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; PRIAM: Histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SPTR: C3B295 Signal transduction histidine kinase; PFAM: Histidine kinase; HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.779
Krac_2538
COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR005467:IPR003660:IPR011712; KEGG: rxy:Rxyl_2810 putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; PRIAM: Histidine kinase; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SPTR: C3BJ53 Signal transduction histidine kinase; PFAM: Histidine kinase; HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.779
Krac_9426
COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712:IPR005467:IPR017205; KEGG: rxy:Rxyl_2612 GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PRIAM: Histidine kinase; SMART: ATP-binding region ATPase domain protein; SPTR: Q1ASU9 GAF sensor signal transduction histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  0.777
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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