STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH90688.1KEGG: hypothetical protein; K01410 mitochondrial intermediate peptidase; SPTR: B3RI46 Putative uncharacterized protein. (233 aa)    
Predicted Functional Partners:
EFH90689.1
Hypothetical protein; KEGG: Cit; citron; K08282 non-specific serine/threonine protein kinase; SPTR: Q2M5E1 Citron.
       0.773
EFH90687.1
COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR014284:IPR007630:IPR011991:IPR013325:IPR 013324:IPR009061; KEGG: rop:ROP_67980 RNA polymerase sigma factor SigB; PFAM: sigma-70 region 4 domain protein; SPTR: C4DDY0 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
       0.483
EFH90690.1
Hypothetical protein; KEGG: pmb:A9601_02371 DNA mismatch repair protein MutS family protein; SPTR: A2BP14 Putative DNA mismatch repair protein MutS family.
       0.408
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.