STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH90758.1Transposase; COGs: COG3316 Transposase and inactivated derivatives; KEGG: bph:Bphy_7685 integrase catalytic region; SPTR: B4WUJ6 Putative uncharacterized protein; PFAM: Transposase IS66 family. (273 aa)    
Predicted Functional Partners:
Krac_1761
Transposase; COGs: COG3316 Transposase and inactivated derivatives; KEGG: cdi:DIP1951 transposase; SPTR: B4WVB5 Integrase core domain protein.
  
     0.767
Krac_0525
Hypothetical protein; KEGG: amr:AM1_G0038 integrase, catalytic region; SPTR: B4WU12 Putative uncharacterized protein.
  
     0.755
EFH90757.1
Hypothetical protein; KEGG: rer:RER_43280 peptide chain release factor 3; SPTR: C1A351 Peptide chain release factor 3.
       0.515
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.