STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH90775.1COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: kko:Kkor_2642 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: C7RAF6 Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2. (456 aa)    
Predicted Functional Partners:
Krac_1903
COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509:IPR011330; KEGG: cai:Caci_6265 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: C1WQZ2 Predicted xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase.
 
 0.966
Krac_3921
COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR011330:IPR002509; KEGG: cai:Caci_6265 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: C1WQZ2 Predicted xylanase/chitin deacetylase; manually curated; PFAM: Polysaccharide deacetylase.
 
 0.965
Krac_4711
COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR006162:IPR011330:IPR002509; KEGG: cai:Caci_6265 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: C7QK45 Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; TIGRFAM: polysaccharide deacetylase family sporulation protein PdaB.
 
 0.965
EFH90716.1
COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509:IPR011330; KEGG: gwc:GWCH70_1449 polysaccharide deacetylase family sporulation protein PdaB; PFAM: polysaccharide deacetylase; SPTR: C6P8Z0 Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase.
 
 0.964
Krac_5140
COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509:IPR011330; KEGG: cai:Caci_6265 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: C1WQZ2 Predicted xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase.
 
 0.964
Krac_9299
Diguanylate cyclase; COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: app:CAP2UW1_1904 response regulator receiver modulated diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: D0D8N0 Response regulator PleD (Stalked cell differentiation-controlling protein); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 
 0.832
EFH90776.1
KEGG: hypothetical protein; SPTR: Q4P9E4 Putative uncharacterized protein.
       0.773
Krac_8056
Polysaccharide deacetylase; InterPro IPR002509:IPR011330; KEGG: sti:Sthe_1132 glycosyl transferase group 1; PFAM: polysaccharide deacetylase; SPTR: D1C2V1 Glycosyl transferase group 1; PFAM: Polysaccharide deacetylase.
  
 
 0.759
Krac_0976
Glycoside hydrolase family 5; COGs: COG2730 Endoglucanase; InterProIPR001956:IPR013781:IPR018087:IPR017853:IPR 008965:IPR001547; KEGG: ace:Acel_0614 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 5; type 3a cellulose-binding domain protein; SPTR: P54583 Endoglucanase E1; PFAM: Cellulose binding domain; Cellulase (glycosyl hydrolase family 5).
    
 0.655
Krac_9959
Glycoside hydrolase family 5; COGs: COG2730 Endoglucanase; InterProIPR017853:IPR008965:IPR001956:IPR013781:IPR 018087:IPR001547; KEGG: ace:Acel_0614 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 5; type 3a cellulose-binding domain protein; SPTR: P54583 Endoglucanase E1; PFAM: Cellulose binding domain; Cellulase (glycosyl hydrolase family 5).
    
 0.655
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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