STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_1251KEGG: sti:Sthe_1559 hypothetical protein; SPTR: D1C427 Putative uncharacterized protein. (455 aa)    
Predicted Functional Partners:
Krac_1249
FG-GAP repeat protein; InterPro IPR013517; KEGG: rca:Rcas_0529 hypothetical protein; PFAM: FG-GAP repeat protein; SPTR: A7NGR6 Putative uncharacterized protein.
       0.586
Krac_1250
Hypothetical protein; KEGG: vcj:VCD_003543 alkyl sulfatase; SPTR: Q4RV19 Chromosome 15 SCAF14992, whole genome shotgun sequence. (Fragment).
       0.586
Krac_1253
Transposase, IS605 OrfB family; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: dge:Dgeo_3043 IS605 family transposase OrfB; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; SPTR: A8ZRH5 Transposase, IS605 OrfB family; TIGRFAM: transposase, IS605 OrfB family; manually curated; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; transposase, putative, N-terminal domain.
       0.477
Krac_1248
Hypothetical protein; KEGG: GOLGA6L2; golgi autoantigen, golgin subfamily a, 6-like 2; SPTR: Q8N9W4 Golgin subfamily A member 6-like protein 2.
       0.436
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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