STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_1283COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: tle:Tlet_2035 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A8F8V5 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component. (289 aa)    
Predicted Functional Partners:
Krac_1284
COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: kol:Kole_1993 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C5CH70 Binding-protein-dependent transport systems inner membrane component.
 
  0.964
Krac_1293
COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: bcv:Bcav_0017 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1WI92 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component.
  
  
 
0.913
EFH90569.1
ABC transporter related protein; COGs: COG3839 ABC-type sugar transport systems ATPase components; InterProIPR008995:IPR003439:IPR017871:IPR005116:IPR 003593; KEGG: ate:Athe_1803 ABC transporter related; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; SPTR: B9MKN8 ABC transporter related; PFAM: ABC transporter; TOBE domain.
 0.884
EFH89835.1
COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: ttr:Tter_2024 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: D1CGQ7 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  0.864
Krac_4946
COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515:IPR018170; KEGG: sco:SCO1064 sugar transport integral membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Q9K435 Putative sugar transport integral membrane protein; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  0.864
Krac_5913
COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: bcv:Bcav_0321 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C5BWC7 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  0.859
Krac_0565
COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: sgr:SGR_838 putative ABC transporter permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B1VSW3 Putative ABC transporter permease protein; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  0.856
Krac_1292
COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: aau:AAur_0686 putative ABC-type sugar transport systems, permease components; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1WI93 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  0.856
Krac_1987
COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: aac:Aaci_2047 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C8WQB4 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  0.855
Krac_4558
COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: bld:BLi03541 hypothetical protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A7VNW7 Putative uncharacterized protein; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  0.854
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.