STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_1294Hypothetical protein. (67 aa)    
Predicted Functional Partners:
Krac_1292
COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: aau:AAur_0686 putative ABC-type sugar transport systems, permease components; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1WI93 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component.
       0.636
Krac_1293
COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: bcv:Bcav_0017 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1WI92 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component.
       0.636
Krac_1295
KEGG: rca:Rcas_2295 hypothetical protein; SPTR: A7NLI7 Putative uncharacterized protein.
       0.561
Krac_1291
Extracellular solute-binding protein family 1; COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059:IPR006311:IPR017909; KEGG: cms:CMS_0051 putative extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C9N2H0 Extracellular solute-binding protein family 1; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
       0.556
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.