STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_1446KEGG: bcv:Bcav_3810 hypothetical protein; SPTR: C5C4C8 Putative uncharacterized protein. (115 aa)    
Predicted Functional Partners:
Krac_1447
COGs: COG0724 RNA-binding protein (RRM domain); InterPro IPR000504:IPR012677; KEGG: dde:Dde_1175 RNA-binding region RNP-1; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; SPTR: Q313C0 RNA-binding region RNP-1; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain).
       0.556
Krac_1445
Periplasmic solute binding protein; COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006127; KEGG: fra:Francci3_2479 periplasmic solute binding protein; PFAM: periplasmic solute binding protein; SPTR: Q2JA46 Periplasmic solute binding protein; PFAM: Periplasmic solute binding protein family.
       0.411
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.