STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_1470COGs: COG0724 RNA-binding protein (RRM domain); InterPro IPR000504:IPR012677; KEGG: dde:Dde_1175 RNA-binding region RNP-1; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; SPTR: Q313C0 RNA-binding region RNP-1; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). (104 aa)    
Predicted Functional Partners:
gpmI
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.979
Krac_7556
NADH dehydrogenase (quinone); COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterPro IPR011538:IPR019575:IPR001949; KEGG: swo:Swol_0657 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; PRIAM: NADH dehydrogenase (quinone); SPTR: B2BSJ8 NADPH-dependent sulfur oxidoreductase B subunit; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit.
    
   0.977
Krac_5087
RNA-metabolising metallo-beta-lactamase; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: hau:Haur_5264 beta-lactamase domain-containing protein; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: A9B977 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain.
   
 0.924
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.840
Krac_9045
COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023:IPR012336:IPR012335; KEGG: lil:LA0891 NADH dehydrogenase I chain E; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: Q8F7Q3 NADH dehydrogenase I chain E; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit.
    
   0.678
EFH90318.1
Transcriptional regulator, XRE family; InterProIPR001387:IPR019734:IPR011990:IPR002182:IPR 010982:IPR000767:IPR013026; KEGG: rrs:RoseRS_3131 NB-ARC domain-containing protein; PFAM: helix-turn-helix domain protein; NB-ARC domain protein; SMART: helix-turn-helix domain protein; Tetratricopeptide repeat; SPTR: A5UXZ0 NB-ARC domain protein; PFAM: Helix-turn-helix; NB-ARC domain.
   
 0.666
Krac_7292
Transcriptional regulator, XRE family; InterProIPR001387:IPR019734:IPR011990:IPR000767:IPR 010982:IPR002182:IPR013026; KEGG: tmz:Tmz1t_3373 NB-ARC domain protein; PFAM: helix-turn-helix domain protein; NB-ARC domain protein; SMART: helix-turn-helix domain protein; Tetratricopeptide repeat; SPTR: C4KCL9 NB-ARC domain protein; PFAM: Helix-turn-helix; NB-ARC domain.
   
 0.666
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.582
rpoB-2
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.582
EFH90488.1
AMP-dependent synthetase and ligase; COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR020845:IPR000873; KEGG: gbm:Gbem_2216 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B5EE83 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme.
   
   0.546
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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