STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_1952KEGG: mco:MCJ_005810 protein-export membrane protein; SPTR: C6PF77 Putative uncharacterized protein. (49 aa)    
Predicted Functional Partners:
Krac_1951
Putative F420-dependent oxidoreductase; COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR016048:IPR011251:IPR019952; KEGG: rxy:Rxyl_0211 luciferase-like protein; PFAM: Luciferase-like, subgroup; SPTR: Q1AZI9 Luciferase-like protein; TIGRFAM: putative F420-dependent oxidoreductase; PFAM: Luciferase-like monooxygenase; TIGRFAM: probable F420-dependent oxidoreductase, Rv1855c family.
       0.642
Krac_1953
KEGG: siy:YG5714_0984 hypothetical protein; SPTR: C3ND27 Putative uncharacterized protein.
       0.536
Krac_1954
Hypothetical protein; KEGG: sro:Sros_0831 major facilitator transporter; SPTR: C4E708 Arabinose efflux permease family protein.
       0.536
Krac_1955
ABC transporter related protein; COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439:IPR017871:IPR003593; KEGG: mba:Mbar_A3550 cobalt transport ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q465M3 Cobalt transport ATP-binding protein; PFAM: ABC transporter.
       0.536
Krac_1956
COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: mma:MM_3017 ABC transporter, permease protein; PFAM: cobalt transport protein; SPTR: Q8PSQ9 ABC transporter, permease protein; PFAM: Cobalt transport protein.
       0.536
Krac_1957
Haloacid dehalogenase domain protein hydrolase; COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834:IPR005833; KEGG: sgo:SGO_0096 hypothetical protein; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: B5IV28 Haloacid dehalogenase-like hydrolase, putative; PFAM: haloacid dehalogenase-like hydrolase.
       0.405
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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