STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_2142Peptidase U61 LD-carboxypeptidase A; COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: sma:SAV_6279 hypothetical protein; PFAM: peptidase U61 LD-carboxypeptidase A; SPTR: C4DRF6 Uncharacterized MccF-like protein (Microcin C7 resistance); PFAM: LD-carboxypeptidase. (349 aa)    
Predicted Functional Partners:
Krac_6794
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR002869:IPR009014:IPR019752:IPR015941:IPR 002880; KEGG: chl:Chy400_1038 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; SPTR: B9LLV4 Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: domain; Pyruvate ferredoxin/flavodoxin oxidoreductase.
    
  0.764
Krac_7768
Biotin/lipoyl attachment domain-containing protein; COGs: COG0511 Biotin carboxyl carrier protein; InterPro IPR011053:IPR000089; KEGG: dau:Daud_1015 pyruvate carboxylase subunit B; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: B1I3L5 Acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein.
   
 
  0.721
murC
UDP-N-acetylmuramate/alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
    
 0.626
Krac_6795
COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011896:IPR011766; KEGG: chl:Chy400_1039 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; SPTR: B9LLV5 Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: Pyruvate ferredoxin oxidoreductase beta subunit C terminal; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 2-oxoacid:acceptor oxi [...]
    
  0.613
Krac_2143
Protein of unknown function DUF1486; COGs: COG5485 ester cyclase; InterPro IPR009959; KEGG: gvi:glr0227 hypothetical protein; PFAM: protein of unknown function DUF1486; SPTR: Q7NP31 Glr0227 protein; PFAM: SnoaL-like polyketide cyclase; TIGRFAM: conserved hypothetical protein, steroid delta-isomerase-related.
 
     0.542
Krac_9081
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; COGs: COG3023 Negative regulator of beta-lactamase expression; InterPro IPR002502; KEGG: swo:Swol_1062 negative regulator of beta-lactamase expression-like protein; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; SPTR: Q0AY32 Negative regulator of beta-lactamase expression-like protein; PFAM: N-acetylmuramoyl-L-alanine amidase.
     
 0.522
Krac_9854
InterPro IPR002502:IPR002477:IPR017909:IPR006619; KEGG: cai:Caci_3182 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; Peptidoglycan-binding domain 1 protein; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2; SPTR: C4RCK5 N-acetylmuramoyl-L-alanine amidase family 2; PFAM: Putative peptidoglycan binding domain; N-acetylmuramoyl-L-alanine amidase.
     
 0.522
Krac_2141
KEGG: ana:alr7634 hypothetical protein; SPTR: Q8ZS78 Alr7634 protein.
       0.499
Krac_8584
NLP/P60 protein; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: cth:Cthe_2413 NLP/P60; PFAM: NLP/P60 protein; SPTR: C7HDD5 NLP/P60 protein; PFAM: NlpC/P60 family; Bacterial SH3 domain.
 
  
 0.447
Krac_7048
KEGG: aac:Aaci_0135 hypothetical protein; SPTR: B7DUJ7 Putative uncharacterized protein.
  
     0.418
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.