STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_2247RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR014284:IPR007627:IPR013249:IPR004176:IPR 010603:IPR013325:IPR013324; KEGG: ttr:Tter_1349 ATPase AAA-2 domain protein; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; Clp domain protein; zinc finger C4 domain protein; SPTR: D1CBU1 ATPase AAA-2 domain protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Clp amino terminal domain; ClpX C4-type zinc finger; Sigma-70 region 2; TIGRFAM: RNA poly [...] (392 aa)    
Predicted Functional Partners:
Krac_3676
DNA binding domain protein, excisionase family; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR010093:IPR009061:IPR004176; KEGG: sti:Sthe_0496 ATPase AAA-2 domain protein; PFAM: Clp domain protein; SPTR: D1C7V1 ATPase AAA-2 domain protein; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Clp amino terminal domain; TIGRFAM: DNA binding domain, excisionase family.
  
     0.772
Krac_8185
ATP-dependent Clp protease adaptor protein ClpS; COGs: COG2127 conserved hypothetical protein; InterPro IPR003769:IPR014719; KEGG: npu:Npun_F3897 ATP-dependent Clp protease adaptor protein ClpS; PFAM: ATP-dependent Clp protease adaptor protein ClpS; SPTR: B2J5C3 ATP-dependent Clp protease adaptor protein ClpS; PFAM: ATP-dependent Clp protease adaptor protein ClpS.
  
 
 0.741
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
  
 
 0.592
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
   0.588
EFH89907.1
Heat shock protein 70; COGs: COG0443 Molecular chaperone; InterPro IPR001023:IPR013126:IPR018181; KEGG: bwe:BcerKBAB4_4387 2-alkenal reductase; PFAM: Heat shock protein 70; SPTR: A9VJL9 2-alkenal reductase; PFAM: Hsp70 protein.
  
   0.588
dnaK-2
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
   0.588
dnaK-3
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
   0.588
Krac_5509
Heat shock protein 70; COGs: COG0443 Molecular chaperone; InterProIPR000719:IPR020635:IPR002290:IPR011009:IPR 017442:IPR013126:IPR017441:IPR008271:IPR018181:IPR001023; KEGG: chl:Chy400_2236 chaperone protein DnaK; PFAM: Heat shock protein 70; Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; SPTR: B9LHR3 Chaperone protein DnaK; PFAM: Protein kinase domain; Hsp70 protein; Tetratricopeptide repeat.
  
   0.588
dnaK-4
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
   0.588
clpP
Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
   
   0.508
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.