STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_2409Protein of unknown function DUF1839; InterPro IPR014989; KEGG: sde:Sde_0168 hypothetical protein; PFAM: Domain of unknown function DUF1839; SPTR: A4B959 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1839). (324 aa)    
Predicted Functional Partners:
Krac_2408
serine--tRNA ligase protein; COGs: COG0172 Seryl-tRNA synthetase; InterPro IPR006195; KEGG: ara:Arad_4633 serine--tRNA ligase protein; SPTR: C3DZP6 Putative uncharacterized protein; PFAM: tRNA synthetase class II core domain (G, H, P, S and T).
       0.788
Krac_2410
Glycoside hydrolase family 2 sugar binding; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterProIPR013781:IPR017853:IPR008979:IPR006102:IPR 006104; KEGG: bxe:Bxe_A2529 beta-mannosidase; PFAM: glycoside hydrolase family 2 sugar binding; SPTR: Q13ZP6 Beta-mannosidase; PFAM: Glycosyl hydrolases family 2, sugar binding domain.
       0.727
Krac_2407
COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR013786:IPR006091:IPR009100:IPR009075:IPR 006092; KEGG: rlt:Rleg2_3795 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B5ZU64 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, N-terminal domain.
       0.723
Krac_2411
Thioesterase; COGs: COG3319 Thioesterase domains of type I polyketide synthase or non-ribosomal peptide synthetase; InterPro IPR001031; KEGG: ara:Arad_7635 non-ribosomal peptide synthetase; PFAM: Thioesterase; SPTR: B4CW24 Amino acid adenylation domain protein; PFAM: Thioesterase domain.
       0.563
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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