STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_2455InterPro IPR003779; KEGG: dol:Dole_0015 carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; SPTR: A8ZRQ8 Carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain. (197 aa)    
Predicted Functional Partners:
Krac_6763
Propanoyl-CoA C-acyltransferase; COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR018483:IPR002155; KEGG: pol:Bpro_5255 thiolase; PRIAM: Propanoyl-CoA C-acyltransferase; SPTR: Q120C8 Thiolase; PFAM: Thiolase, C-terminal domain.
  
     0.614
Krac_6764
Protein of unknown function DUF35; COGs: COG1545 nucleic-acid-binding protein containing a Zn-ribbon; InterPro IPR002878; KEGG: pol:Bpro_5254 hypothetical protein; PFAM: protein of unknown function DUF35; SPTR: A3TZQ3 Putative uncharacterized protein; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain.
  
     0.601
EFH89893.1
FAD dependent oxidoreductase; COGs: COG2072 flavoprotein involved in K+ transport; InterPro IPR013027:IPR000103:IPR006076:IPR017441; KEGG: bbt:BBta_5690 putative flavin-containing monooxygenase; PFAM: FAD dependent oxidoreductase; SPTR: A5EN99 Putative Flavin-containing monooxygenase; PFAM: Flavin-binding monooxygenase-like; Thi4 family.
 
     0.474
Krac_2456
Aconitate hydratase; COGs: COG1048 Aconitase A; InterProIPR015931:IPR015932:IPR015928:IPR006250:IPR 001030:IPR000573; KEGG: rxy:Rxyl_2824 aconitate hydratase; PFAM: aconitate hydratase domain protein; SPTR: Q1AS92 Aconitase; TIGRFAM: aconitate hydratase; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase, putative, Aquifex type.
       0.456
Krac_7152
COGs: COG2020 Putative protein-S-isoprenylcysteine methyltransferase; InterPro IPR007269; KEGG: mmi:MMAR_4222 integral membrane protein; PFAM: Isoprenylcysteine carboxyl methyltransferase; SPTR: B2HS52 Conserved integral membrane protein; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family.
  
     0.441
EFH90544.1
NUDIX hydrolase; InterPro IPR015797:IPR000086; KEGG: bra:BRADO4309 putative NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: A0YA64 NUDIX hydrolase; PFAM: NUDIX domain.
  
     0.424
Krac_2947
SMP-30/Gluconolaconase/LRE domain protein; COGs: COG3386 Gluconolactonase; InterPro IPR013658:IPR011042:IPR005511; KEGG: mlo:mll7820 hypothetical protein; PFAM: SMP-30/Gluconolaconase/LRE domain protein; SPTR: C8SUV2 SMP-30/Gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region.
  
     0.415
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.