STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_2543Protein of unknown function DUF893 YccS/YhfK; COGs: COG1289 membrane protein; InterPro IPR000276:IPR010289; KEGG: aac:Aaci_1602 protein of unknown function DUF893 YccS/YhfK; PFAM: protein of unknown function DUF893 YccS/YhfK; SPTR: B7DPQ2 Putative uncharacterized protein; PFAM: Fusaric acid resistance protein family. (730 aa)    
Predicted Functional Partners:
Krac_2544
Transposase IS200-family protein; COGs: COG1943 Transposase and inactivated derivatives; InterPro IPR002686; KEGG: mma:MM_0422 transposase; PFAM: transposase IS200-family protein; SPTR: Q8PZS0 Transposase; PFAM: Transposase IS200 like.
  
    0.526
Krac_2545
HNH endonuclease; InterPro IPR003615:IPR002711; KEGG: pha:PSHAb0292 putative HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Q3IBU7 Putative HNH endonuclease; PFAM: HNH endonuclease.
       0.524
EFH88959.1
Nitrogen-fixing NifU domain protein; COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR002871; KEGG: hau:Haur_2531 NifU family SUF system FeS assembly protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: A9B060 SUF system FeS assembly protein, NifU family; PFAM: NifU-like N terminal domain.
   
    0.508
Krac_8821
SUF system FeS assembly protein, NifU family; COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR011341:IPR002871; KEGG: ttr:Tter_1695 SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; SPTR: D1CCT6 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family.
   
    0.508
Krac_9896
SUF system FeS assembly protein, NifU family; COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR011341:IPR002871; KEGG: tro:trd_0377 SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; SPTR: B9KY34 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family.
   
    0.508
EFH89589.1
KEGG: rlt:Rleg2_4526 hypothetical protein; SPTR: Q2K1K1 Hypothetical conserved protein; PFAM: Protein of unknown function (DUF3311).
  
     0.493
Krac_7746
Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR016196:IPR011701; KEGG: cbf:CLI_3792 major facilitator family protein; PFAM: major facilitator superfamily MFS_1; SPTR: Q1DG53 Major facilitator family transporter; PFAM: Major Facilitator Superfamily.
  
    0.435
Krac_0199
Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR016196:IPR011701; KEGG: mxa:MXAN_0087 major facilitator family transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Q1DG53 Major facilitator family transporter; PFAM: Major Facilitator Superfamily.
  
    0.433
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.