STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_2862TrkA-N domain protein; COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR016040:IPR013099:IPR003148:IPR006037; KEGG: gbm:Gbem_3794 TrkA-N domain protein; PFAM: TrkA-N domain protein; Ion transport 2 domain protein; TrkA-C domain protein; SPTR: B5EEK0 TrkA-N domain protein; PFAM: Ion channel; TrkA-N domain; TrkA-C domain. (360 aa)    
Predicted Functional Partners:
Krac_6827
Competence/damage-inducible protein CinA; COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR008135:IPR008136:IPR001453; KEGG: mta:Moth_0735 competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; SPTR: Q2RKI6 Putative competence-damage inducible protein; TIGRFAM: competence/damage-inducible protein CinA; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-ter [...]
    
 0.773
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
  0.682
Krac_1328
Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
    0.618
EFH89560.1
Thiamine S protein; COGs: COG1977 Molybdopterin converting factor small subunit; InterPro IPR016155:IPR003749:IPR012675; KEGG: rrs:RoseRS_3195 molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; SPTR: A5UY53 Molybdopterin synthase subunit MoaD / molybdopterin synthase subunit MoaE; manually curated; PFAM: ThiS family; TIGRFAM: molybdopterin converting factor, subunit 1, non-archaeal.
   
    0.605
EFH89561.1
Molybdopterin biosynthesis MoaE protein; COGs: COG0314 Molybdopterin converting factor large subunit; InterPro IPR003448; KEGG: sti:Sthe_0748 MoaD family protein; PFAM: molybdopterin biosynthesis MoaE protein; SPTR: D1C1R8 MoaD family protein; PFAM: MoaE protein.
   
    0.605
EFH90213.1
uroporphyrin-III C-methyltransferase; COGs: COG0007 Uroporphyrinogen-III methylase; InterProIPR014777:IPR014776:IPR000878:IPR006366:IPR 003043; KEGG: mtp:Mthe_1124 uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: A0B883 Uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
    0.549
Krac_2861
acyl-ACP thioesterase; InterPro IPR002864; KEGG: afo:Afer_0797 acyl-ACP thioesterase; PFAM: acyl-ACP thioesterase; SPTR: C7LYD7 Acyl-ACP thioesterase; PFAM: Acyl-ACP thioesterase.
       0.545
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
   
    0.536
EFH89935.1
NAD-dependent epimerase/dehydratase; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR001509; KEGG: rmr:Rmar_1606 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: D0MJ34 NAD-dependent epimerase/dehydratase; PFAM: Protein of unknown function (DUF2867); NmrA-like family.
  
     0.519
Krac_3184
Metallophosphoesterase; InterPro IPR006186:IPR004843; KEGG: tna:CTN_1842 serine/threonine protein phosphatase; PFAM: metallophosphoesterase; SPTR: B9KAN5 Serine/threonine protein phosphatase; PFAM: Calcineurin-like phosphoesterase.
  
     0.425
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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