STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_2935Resolvase domain protein; COGs: COG2452 site-specific integrase-resolvase; InterProIPR006118:IPR006119:IPR009061:IPR000551:IPR 001959; KEGG: min:Minf_0375 transposon IS605 OrfA, integrase-resolvase; PFAM: Resolvase domain; regulatory protein MerR; putative transposase IS891/IS1136/IS1341 family; SPTR: A0ZLC9 Putative uncharacterized protein; PFAM: Helix-turn-helix domain; MerR family regulatory protein; Resolvase, N terminal domain; Probable transposase. (434 aa)    
Predicted Functional Partners:
Krac_2936
Type III restriction protein res subunit; COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR006935:IPR001650:IPR014021:IPR014001; KEGG: hsl:OE7176R RAD25-type DNA repair helicase; PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: A7BV57 DNA repair protein RAD25 related protein; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit.
       0.671
Krac_2937
Glycosyltransferase, MGT family; COGs: COG1819 Glycosyl transferase related to UDP-glucuronosyltransferase; InterPro IPR002213:IPR006326; KEGG: bcu:BCAH820_2114 glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; SPTR: C3HHW9 Glycosyltransferase, MGT; TIGRFAM: glycosyltransferase, MGT family; PFAM: Glycosyltransferase family 28 N-terminal domain; UDP-glucoronosyl and UDP-glucosyl transferase; TIGRFAM: glycosyltransferase, MGT family.
       0.411
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.