STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_3052Glycoside hydrolase family 3 domain protein; COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR017853:IPR002772:IPR011658; KEGG: rca:Rcas_0919 glycoside hydrolase family 3 protein; PFAM: glycoside hydrolase family 3 domain protein; PA14 domain protein; SMART: PA14 domain protein; SPTR: A7NHT7 Glycoside hydrolase family 3 domain protein; PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain; PA14 domain. (825 aa)    
Predicted Functional Partners:
Krac_4657
Glycoside hydrolase family 10; COGs: COG3693 Beta-1 4-xylanase; InterProIPR001919:IPR017970:IPR001000:IPR013781:IPR 012291:IPR017853:IPR008965; KEGG: cai:Caci_4414 glycoside hydrolase family 10; PFAM: glycoside hydrolase family 10; cellulose-binding family II; SMART: glycoside hydrolase family 10; cellulose-binding family II; SPTR: C4RMC7 Beta-1,4-xylanase; PFAM: Cellulose binding domain; Glycosyl hydrolase family 10.
 
  
 0.678
Krac_3027
COGs: COG1501 Alpha-glucosidase family 31 of glycosyl hydrolase; InterPro IPR017853:IPR000322; KEGG: sro:Sros_1288 alpha-glucosidase; PFAM: glycoside hydrolase family 31; PRIAM: Alpha-glucosidase; SPTR: C4ELG2 Family 31 glycosyl hydrolase, alpha-glucosidase; PFAM: Glycosyl hydrolases family 31; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.670
EFH88554.1
Alpha amylase catalytic region; COGs: COG0366 Glycosidase; InterProIPR006047:IPR017853:IPR013781:IPR013780:IPR 006589; KEGG: rca:Rcas_3863 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: A7NQQ3 Alpha amylase catalytic region; PFAM: Alpha amylase, catalytic domain.
  
 
 0.665
Krac_0976
Glycoside hydrolase family 5; COGs: COG2730 Endoglucanase; InterProIPR001956:IPR013781:IPR018087:IPR017853:IPR 008965:IPR001547; KEGG: ace:Acel_0614 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 5; type 3a cellulose-binding domain protein; SPTR: P54583 Endoglucanase E1; PFAM: Cellulose binding domain; Cellulase (glycosyl hydrolase family 5).
    
 0.651
Krac_9959
Glycoside hydrolase family 5; COGs: COG2730 Endoglucanase; InterProIPR017853:IPR008965:IPR001956:IPR013781:IPR 018087:IPR001547; KEGG: ace:Acel_0614 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 5; type 3a cellulose-binding domain protein; SPTR: P54583 Endoglucanase E1; PFAM: Cellulose binding domain; Cellulase (glycosyl hydrolase family 5).
    
 0.651
Krac_3469
Alpha amylase catalytic region; COGs: COG0366 Glycosidase; InterPro IPR013781:IPR006589:IPR017853:IPR006047; KEGG: cyc:PCC7424_3146 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: B7KCJ7 Alpha amylase catalytic region; PFAM: Alpha amylase, catalytic domain.
  
 
 0.634
Krac_3053
Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: npu:Npun_F0217 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 43; SPTR: B2J4N3 Glycoside hydrolase, family 43; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.603
Krac_5015
alpha-L-arabinofuranosidase domain protein; COGs: COG3534 Alpha-L-arabinofuranosidase; InterPro IPR017853:IPR010720; KEGG: sus:Acid_3644 alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein; SPTR: Q02D67 Alpha-N-arabinofuranosidase; PFAM: Alpha-L-arabinofuranosidase C-terminus.
 
   
 0.598
Krac_0441
COGs: COG1501 Alpha-glucosidase family 31 of glycosyl hydrolase; InterPro IPR000322:IPR000209:IPR017853; KEGG: rxy:Rxyl_2099 alpha-glucosidase; PFAM: glycoside hydrolase family 31; PRIAM: Alpha-glucosidase; SPTR: D1C8H0 Alpha-glucosidase; PFAM: Glycosyl hydrolases family 31; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.561
Krac_6719
SCP-like extracellular; COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR014044; KEGG: cai:Caci_0862 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: SCP-like extracellular; SPTR: C7Q2F3 RNA polymerase, sigma-24 subunit, ECF subfamily.
    
  0.471
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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