STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_3205KEGG: sus:Acid_3363 hypothetical protein; SPTR: Q01N72 Putative uncharacterized protein. (168 aa)    
Predicted Functional Partners:
Krac_3206
Hypothetical protein.
       0.773
Krac_3207
Transcriptional regulator, AraC family; COGs: COG2169 Adenosine deaminase; InterProIPR004026:IPR011991:IPR014048:IPR009057:IPR 018060:IPR001497:IPR000005:IPR008332; KEGG: npu:Npun_F5226 methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; Ada metal-binding domain protein; helix-turn-helix- domain containing protein AraC type; methylguanine DNA methyltransferase ribonuclease domain protein; PRIAM: Methylated-DNA--[protein]-cysteine S-methyltransferase; SMART: Helix-turn-helix, AraC domain; SPTR: B2J3A4 Methylated-DN [...]
       0.773
Krac_3204
Transposase, IS4; KEGG: fra:Francci3_2121 transposase, IS4; SPTR: Q2JDZ3 Transposase, IS4.
       0.668
Krac_3208
KEGG: hypothetical protein LOC100208172; SPTR: O18511 Insect intestinal mucin IIM22.
       0.543
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.