STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_3314Hypothetical protein; InterPro IPR011260; KEGG: hau:Haur_1262 hypothetical protein; SPTR: A9B1M5 Putative uncharacterized protein. (87 aa)    
Predicted Functional Partners:
Krac_3315
Bifunctional deaminase-reductase domain protein; InterPro IPR002734; KEGG: pjd:Pjdr2_1471 dihydrofolate reductase-like protein; PFAM: bifunctional deaminase-reductase domain protein; SPTR: C6CWT2 Dihydrofolate reductase-like protein; PFAM: RibD C-terminal domain.
       0.516
Krac_3316
COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000639:IPR000073; KEGG: sro:Sros_7423 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: C4E414 Predicted hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold.
       0.415
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.